Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
RAPGEF3O95398 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC31.91■■■□□ 2.7
RAPGEF3O95398 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC31.91■■■□□ 2.7
RAPGEF3O95398 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC31.91■■■□□ 2.7
RAPGEF3O95398 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC31.9■■■□□ 2.7
RAPGEF3O95398 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC31.9■■■□□ 2.7
RAPGEF3O95398 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
RAPGEF3O95398 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC31.9■■■□□ 2.7
RAPGEF3O95398 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.9■■■□□ 2.7
RAPGEF3O95398 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC31.9■■■□□ 2.7
RAPGEF3O95398 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
RAPGEF3O95398 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
RAPGEF3O95398 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
RAPGEF3O95398 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
RAPGEF3O95398 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
RAPGEF3O95398 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC31.89■■■□□ 2.7
RAPGEF3O95398 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC31.89■■■□□ 2.7
RAPGEF3O95398 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
RAPGEF3O95398 DHDH-203ENST00000522614 776 ntTSL 5 BASIC31.88■■■□□ 2.69
RAPGEF3O95398 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC31.88■■■□□ 2.69
RAPGEF3O95398 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC31.88■■■□□ 2.69
RAPGEF3O95398 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC31.88■■■□□ 2.69
RAPGEF3O95398 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
RAPGEF3O95398 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC31.88■■■□□ 2.69
RAPGEF3O95398 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
RAPGEF3O95398 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC31.88■■■□□ 2.69
RAPGEF3O95398 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
RAPGEF3O95398 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
RAPGEF3O95398 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC31.88■■■□□ 2.69
RAPGEF3O95398 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
RAPGEF3O95398 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC31.87■■■□□ 2.69
RAPGEF3O95398 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC31.87■■■□□ 2.69
RAPGEF3O95398 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
RAPGEF3O95398 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC31.87■■■□□ 2.69
RAPGEF3O95398 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
RAPGEF3O95398 SERF2-207ENST00000409614 582 ntTSL 2 BASIC31.87■■■□□ 2.69
RAPGEF3O95398 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
RAPGEF3O95398 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC31.87■■■□□ 2.69
RAPGEF3O95398 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
RAPGEF3O95398 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC31.87■■■□□ 2.69
RAPGEF3O95398 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
RAPGEF3O95398 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
RAPGEF3O95398 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC31.86■■■□□ 2.69
RAPGEF3O95398 AL355075.4-201ENST00000554988 638 ntBASIC31.86■■■□□ 2.69
RAPGEF3O95398 C2orf69P4-201ENST00000565394 541 ntBASIC31.86■■■□□ 2.69
RAPGEF3O95398 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
RAPGEF3O95398 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC31.86■■■□□ 2.69
RAPGEF3O95398 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC31.86■■■□□ 2.69
RAPGEF3O95398 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 MCRIP2P1-201ENST00000394346 511 ntBASIC31.85■■■□□ 2.69
RAPGEF3O95398 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 RN7SL850P-201ENST00000579959 291 ntBASIC31.85■■■□□ 2.69
RAPGEF3O95398 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC31.85■■■□□ 2.69
RAPGEF3O95398 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
RAPGEF3O95398 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC31.84■■■□□ 2.69
RAPGEF3O95398 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
RAPGEF3O95398 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
RAPGEF3O95398 TMPOP1-202ENST00000424642 1267 ntBASIC31.84■■■□□ 2.69
RAPGEF3O95398 NT5C-211ENST00000582170 653 ntTSL 3 BASIC31.84■■■□□ 2.69
RAPGEF3O95398 MTDHP1-201ENST00000605323 784 ntBASIC31.84■■■□□ 2.69
RAPGEF3O95398 AC124016.1-201ENST00000609552 612 ntBASIC31.84■■■□□ 2.69
RAPGEF3O95398 AC113410.3-201ENST00000623366 203 ntBASIC31.84■■■□□ 2.69
RAPGEF3O95398 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
RAPGEF3O95398 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
RAPGEF3O95398 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
RAPGEF3O95398 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC31.83■■■□□ 2.69
RAPGEF3O95398 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC31.83■■■□□ 2.69
RAPGEF3O95398 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
RAPGEF3O95398 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
RAPGEF3O95398 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC31.83■■■□□ 2.69
RAPGEF3O95398 MIR4785-201ENST00000585005 73 ntBASIC31.83■■■□□ 2.69
RAPGEF3O95398 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
RAPGEF3O95398 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
RAPGEF3O95398 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
RAPGEF3O95398 LY6E-205ENST00000519611 635 ntTSL 3 BASIC31.82■■■□□ 2.68
RAPGEF3O95398 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC31.82■■■□□ 2.68
RAPGEF3O95398 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC31.82■■■□□ 2.68
RAPGEF3O95398 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
RAPGEF3O95398 SNX21-213ENST00000614929 587 ntTSL 5 BASIC31.82■■■□□ 2.68
RAPGEF3O95398 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
RAPGEF3O95398 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
RAPGEF3O95398 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
RAPGEF3O95398 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
RAPGEF3O95398 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
RAPGEF3O95398 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC31.81■■■□□ 2.68
RAPGEF3O95398 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC31.81■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms