Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
USH2AO75445 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC9.49□□□□□ -0.89
USH2AO75445 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 AC239809.2-201ENST00000415381 517 ntBASIC9.49□□□□□ -0.89
USH2AO75445 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC9.49□□□□□ -0.89
USH2AO75445 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC9.49□□□□□ -0.89
USH2AO75445 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC9.49□□□□□ -0.89
USH2AO75445 AC026471.5-201ENST00000615068 467 ntBASIC9.49□□□□□ -0.89
USH2AO75445 AC010947.1-201ENST00000623454 693 ntBASIC9.49□□□□□ -0.89
USH2AO75445 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC9.49□□□□□ -0.89
USH2AO75445 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC9.49□□□□□ -0.89
USH2AO75445 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC9.49□□□□□ -0.89
USH2AO75445 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC9.49□□□□□ -0.89
USH2AO75445 HES2-206ENST00000489730 730 ntTSL 2 BASIC9.49□□□□□ -0.89
USH2AO75445 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC9.48□□□□□ -0.89
USH2AO75445 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC9.48□□□□□ -0.89
USH2AO75445 AC142086.6-201ENST00000621154 1765 ntBASIC9.48□□□□□ -0.89
USH2AO75445 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC9.48□□□□□ -0.89
USH2AO75445 AC124016.1-201ENST00000609552 612 ntBASIC9.48□□□□□ -0.89
USH2AO75445 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC9.48□□□□□ -0.89
USH2AO75445 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 POM121L13P-201ENST00000422362 380 ntBASIC9.48□□□□□ -0.89
USH2AO75445 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC9.48□□□□□ -0.89
USH2AO75445 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC9.48□□□□□ -0.89
USH2AO75445 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC9.48□□□□□ -0.89
USH2AO75445 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC9.48□□□□□ -0.89
USH2AO75445 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC9.48□□□□□ -0.89
USH2AO75445 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC9.48□□□□□ -0.89
USH2AO75445 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 AC104076.2-201ENST00000448912 469 ntBASIC9.48□□□□□ -0.89
USH2AO75445 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 AL031963.3-201ENST00000606441 850 ntBASIC9.48□□□□□ -0.89
USH2AO75445 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC9.48□□□□□ -0.89
USH2AO75445 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC9.48□□□□□ -0.89
USH2AO75445 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC9.48□□□□□ -0.89
USH2AO75445 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC9.48□□□□□ -0.89
USH2AO75445 SLC25A3P1-201ENST00000443844 931 ntBASIC9.48□□□□□ -0.89
USH2AO75445 DUX4L26-201ENST00000489078 1255 ntBASIC9.48□□□□□ -0.89
USH2AO75445 AL589743.5-201ENST00000616611 1050 ntBASIC9.48□□□□□ -0.89
USH2AO75445 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC9.47□□□□□ -0.89
USH2AO75445 AL137013.1-201ENST00000432946 1228 ntBASIC9.47□□□□□ -0.89
USH2AO75445 AL591742.1-201ENST00000604433 565 ntBASIC9.47□□□□□ -0.89
USH2AO75445 AP000525.1-201ENST00000608286 694 ntBASIC9.47□□□□□ -0.89
USH2AO75445 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC9.47□□□□□ -0.89
USH2AO75445 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC9.47□□□□□ -0.89
USH2AO75445 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC9.47□□□□□ -0.89
USH2AO75445 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC9.47□□□□□ -0.89
USH2AO75445 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC9.47□□□□□ -0.89
USH2AO75445 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC9.47□□□□□ -0.89
USH2AO75445 AC005363.2-201ENST00000618631 242 ntBASIC9.47□□□□□ -0.89
USH2AO75445 DECR2-212ENST00000627716 352 ntTSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC9.47□□□□□ -0.89
USH2AO75445 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC9.47□□□□□ -0.89
USH2AO75445 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC9.47□□□□□ -0.89
USH2AO75445 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.89
USH2AO75445 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
USH2AO75445 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC9.46□□□□□ -0.89
USH2AO75445 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC9.46□□□□□ -0.89
USH2AO75445 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
USH2AO75445 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC9.46□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms