Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
CACNA1FO60840 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
CACNA1FO60840 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC26.63■■□□□ 1.85
CACNA1FO60840 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
CACNA1FO60840 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC26.63■■□□□ 1.85
CACNA1FO60840 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC26.62■■□□□ 1.85
CACNA1FO60840 OAS3-207ENST00000551007 998 ntTSL 2 BASIC26.62■■□□□ 1.85
CACNA1FO60840 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC26.62■■□□□ 1.85
CACNA1FO60840 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CACNA1FO60840 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CACNA1FO60840 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
CACNA1FO60840 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CACNA1FO60840 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC26.62■■□□□ 1.85
CACNA1FO60840 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.62■■□□□ 1.85
CACNA1FO60840 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC26.62■■□□□ 1.85
CACNA1FO60840 GUSBP6-202ENST00000438529 1198 ntBASIC26.62■■□□□ 1.85
CACNA1FO60840 TERF1P5-201ENST00000477545 1207 ntBASIC26.62■■□□□ 1.85
CACNA1FO60840 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC26.62■■□□□ 1.85
CACNA1FO60840 PLLP-204ENST00000569059 665 ntTSL 3 BASIC26.62■■□□□ 1.85
CACNA1FO60840 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC26.62■■□□□ 1.85
CACNA1FO60840 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC26.62■■□□□ 1.85
CACNA1FO60840 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CACNA1FO60840 EXOC3-AS1-202ENST00000623673 1663 ntBASIC26.61■■□□□ 1.85
CACNA1FO60840 AC007322.1-201ENST00000426983 750 ntBASIC26.61■■□□□ 1.85
CACNA1FO60840 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC26.61■■□□□ 1.85
CACNA1FO60840 PPP1R14BP3-201ENST00000509033 445 ntBASIC26.61■■□□□ 1.85
CACNA1FO60840 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
CACNA1FO60840 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CACNA1FO60840 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CACNA1FO60840 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CACNA1FO60840 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CACNA1FO60840 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
CACNA1FO60840 FBXW4P1-201ENST00000426721 2239 ntBASIC26.61■■□□□ 1.85
CACNA1FO60840 STK25-234ENST00000535007 2459 ntTSL 2 BASIC26.61■■□□□ 1.85
CACNA1FO60840 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
CACNA1FO60840 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1FO60840 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1FO60840 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1FO60840 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1FO60840 LINC00565-201ENST00000562710 2331 ntBASIC26.6■■□□□ 1.85
CACNA1FO60840 BMP1-204ENST00000397814 836 ntTSL 4 BASIC26.6■■□□□ 1.85
CACNA1FO60840 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC26.6■■□□□ 1.85
CACNA1FO60840 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.6■■□□□ 1.85
CACNA1FO60840 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1FO60840 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1FO60840 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
CACNA1FO60840 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC26.59■■□□□ 1.85
CACNA1FO60840 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
CACNA1FO60840 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 NCF1B-203ENST00000435988 1254 ntBASIC26.59■■□□□ 1.85
CACNA1FO60840 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC26.59■■□□□ 1.85
CACNA1FO60840 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC26.59■■□□□ 1.85
CACNA1FO60840 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
CACNA1FO60840 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC26.59■■□□□ 1.85
CACNA1FO60840 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC26.59■■□□□ 1.85
CACNA1FO60840 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC26.59■■□□□ 1.85
CACNA1FO60840 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
CACNA1FO60840 ID1-201ENST00000376105 1233 ntBASIC26.58■■□□□ 1.85
CACNA1FO60840 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CACNA1FO60840 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC26.58■■□□□ 1.85
CACNA1FO60840 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
CACNA1FO60840 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
CACNA1FO60840 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
CACNA1FO60840 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC26.58■■□□□ 1.85
CACNA1FO60840 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
CACNA1FO60840 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC26.58■■□□□ 1.85
CACNA1FO60840 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.84
CACNA1FO60840 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CACNA1FO60840 AC079834.2-201ENST00000609776 1949 ntBASIC26.57■■□□□ 1.84
CACNA1FO60840 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CACNA1FO60840 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
CACNA1FO60840 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
CACNA1FO60840 AC133552.2-202ENST00000575694 574 ntBASIC26.57■■□□□ 1.84
CACNA1FO60840 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.57■■□□□ 1.84
CACNA1FO60840 MDK-213ENST00000617138 635 ntTSL 2 BASIC26.57■■□□□ 1.84
CACNA1FO60840 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CACNA1FO60840 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
CACNA1FO60840 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC26.57■■□□□ 1.84
CACNA1FO60840 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC26.57■■□□□ 1.84
CACNA1FO60840 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
CACNA1FO60840 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
CACNA1FO60840 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC26.57■■□□□ 1.84
CACNA1FO60840 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC26.56■■□□□ 1.84
CACNA1FO60840 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CACNA1FO60840 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC26.56■■□□□ 1.84
CACNA1FO60840 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CACNA1FO60840 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC26.56■■□□□ 1.84
CACNA1FO60840 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
CACNA1FO60840 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC26.56■■□□□ 1.84
CACNA1FO60840 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CACNA1FO60840 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC26.56■■□□□ 1.84
CACNA1FO60840 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CACNA1FO60840 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
CACNA1FO60840 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms