Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.45■■□□□ 1.02
CBX4O00257 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CBX4O00257 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.44■■□□□ 1.02
CBX4O00257 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.44■■□□□ 1.02
CBX4O00257 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.44■■□□□ 1.02
CBX4O00257 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.44■■□□□ 1.02
CBX4O00257 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.44■■□□□ 1.02
CBX4O00257 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.44■■□□□ 1.02
CBX4O00257 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CBX4O00257 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CBX4O00257 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CBX4O00257 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.44■■□□□ 1.02
CBX4O00257 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.44■■□□□ 1.02
CBX4O00257 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CBX4O00257 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CBX4O00257 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.43■■□□□ 1.02
CBX4O00257 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CBX4O00257 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.43■■□□□ 1.02
CBX4O00257 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.43■■□□□ 1.02
CBX4O00257 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.43■■□□□ 1.02
CBX4O00257 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CBX4O00257 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 KRT16P2-201ENST00000414673 1423 ntBASIC21.43■■□□□ 1.02
CBX4O00257 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CBX4O00257 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CBX4O00257 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CBX4O00257 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CBX4O00257 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CBX4O00257 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.42■■□□□ 1.02
CBX4O00257 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CBX4O00257 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CBX4O00257 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.42■■□□□ 1.02
CBX4O00257 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CBX4O00257 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.42■■□□□ 1.02
CBX4O00257 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CBX4O00257 SLC7A5P1-201ENST00000568957 537 ntBASIC21.42■■□□□ 1.02
CBX4O00257 PKD1P6-201ENST00000343738 4769 ntBASIC21.42■■□□□ 1.02
CBX4O00257 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CBX4O00257 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CBX4O00257 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.41■■□□□ 1.02
CBX4O00257 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.41■■□□□ 1.02
CBX4O00257 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.41■■□□□ 1.02
CBX4O00257 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.41■■□□□ 1.02
CBX4O00257 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.41■■□□□ 1.02
CBX4O00257 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CBX4O00257 AC010536.3-201ENST00000620306 533 ntBASIC21.41■■□□□ 1.02
CBX4O00257 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 AC079834.2-201ENST00000609776 1949 ntBASIC21.41■■□□□ 1.02
CBX4O00257 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
CBX4O00257 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CBX4O00257 LINC00565-201ENST00000562710 2331 ntBASIC21.4■■□□□ 1.02
CBX4O00257 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CBX4O00257 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CBX4O00257 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.4■■□□□ 1.02
CBX4O00257 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.4■■□□□ 1.02
CBX4O00257 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.4■■□□□ 1.02
CBX4O00257 DUX4L16-201ENST00000555130 1264 ntBASIC21.4■■□□□ 1.02
CBX4O00257 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.4■■□□□ 1.02
CBX4O00257 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CBX4O00257 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.4■■□□□ 1.02
CBX4O00257 AC244015.2-201ENST00000616358 1861 ntBASIC21.4■■□□□ 1.02
CBX4O00257 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.4■■□□□ 1.02
CBX4O00257 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.4■■□□□ 1.02
CBX4O00257 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms