Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC22.59■■□□□ 1.21
SMIM28A0A1B0GU29 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 OR10C1-204ENST00000622521 1039 ntBASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SMIM28A0A1B0GU29 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
SMIM28A0A1B0GU29 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SMIM28A0A1B0GU29 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC22.58■■□□□ 1.2
SMIM28A0A1B0GU29 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC22.58■■□□□ 1.2
SMIM28A0A1B0GU29 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 SLC29A4P1-201ENST00000398760 971 ntBASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 AL162412.1-201ENST00000567129 965 ntBASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC22.57■■□□□ 1.2
SMIM28A0A1B0GU29 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 AL138781.1-201ENST00000566567 1274 ntBASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 EP400NL-214ENST00000641289 2402 ntBASIC22.56■■□□□ 1.2
SMIM28A0A1B0GU29 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC091799.1-201ENST00000422823 811 ntBASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC245052.3-201ENST00000450182 901 ntBASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC093787.1-201ENST00000450396 207 ntBASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC069236.1-201ENST00000604339 616 ntBASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC016405.3-201ENST00000607710 860 ntBASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 AC008694.1-202ENST00000636953 945 ntBASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMIM28A0A1B0GU29 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 AL512625.2-201ENST00000417533 625 ntBASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 PFKL-212ENST00000628044 129 ntTSL 3 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 MARS-234ENST00000630571 216 ntTSL 5 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 MARS-235ENST00000630803 183 ntTSL 3 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
SMIM28A0A1B0GU29 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
SMIM28A0A1B0GU29 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms