Protein–RNA interactions for Protein: P97496

Smarcc1, SWI/SNF complex subunit SMARCC1, mousemouse

Predictions only

Length 1,104 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcc1P97496 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Smarcc1P97496 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC32.03■■■□□ 2.72
Smarcc1P97496 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC32.03■■■□□ 2.72
Smarcc1P97496 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
Smarcc1P97496 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC32.01■■■□□ 2.71
Smarcc1P97496 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC32.01■■■□□ 2.71
Smarcc1P97496 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.71
Smarcc1P97496 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
Smarcc1P97496 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
Smarcc1P97496 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC31.98■■■□□ 2.71
Smarcc1P97496 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
Smarcc1P97496 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
Smarcc1P97496 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC31.94■■■□□ 2.7
Smarcc1P97496 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC31.94■■■□□ 2.7
Smarcc1P97496 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
Smarcc1P97496 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
Smarcc1P97496 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC31.92■■■□□ 2.7
Smarcc1P97496 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC31.92■■■□□ 2.7
Smarcc1P97496 Gm7432-201ENSMUST00000210343 879 ntBASIC31.92■■■□□ 2.7
Smarcc1P97496 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
Smarcc1P97496 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
Smarcc1P97496 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC31.89■■■□□ 2.7
Smarcc1P97496 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
Smarcc1P97496 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
Smarcc1P97496 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
Smarcc1P97496 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Smarcc1P97496 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
Smarcc1P97496 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC31.81■■■□□ 2.68
Smarcc1P97496 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
Smarcc1P97496 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Smarcc1P97496 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
Smarcc1P97496 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Smarcc1P97496 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC31.79■■■□□ 2.68
Smarcc1P97496 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
Smarcc1P97496 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC31.79■■■□□ 2.68
Smarcc1P97496 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Smarcc1P97496 Gm30346-201ENSMUST00000218641 1699 ntBASIC31.76■■■□□ 2.68
Smarcc1P97496 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
Smarcc1P97496 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
Smarcc1P97496 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC31.74■■■□□ 2.67
Smarcc1P97496 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC31.74■■■□□ 2.67
Smarcc1P97496 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
Smarcc1P97496 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
Smarcc1P97496 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Smarcc1P97496 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
Smarcc1P97496 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
Smarcc1P97496 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC31.69■■■□□ 2.66
Smarcc1P97496 Gm11599-201ENSMUST00000118720 878 ntBASIC31.68■■■□□ 2.66
Smarcc1P97496 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC31.68■■■□□ 2.66
Smarcc1P97496 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC31.67■■■□□ 2.66
Smarcc1P97496 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Smarcc1P97496 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC31.66■■■□□ 2.66
Smarcc1P97496 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC31.64■■■□□ 2.66
Smarcc1P97496 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
Smarcc1P97496 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC31.62■■■□□ 2.65
Smarcc1P97496 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
Smarcc1P97496 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC31.61■■■□□ 2.65
Smarcc1P97496 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
Smarcc1P97496 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
Smarcc1P97496 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
Smarcc1P97496 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC31.59■■■□□ 2.65
Smarcc1P97496 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
Smarcc1P97496 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
Smarcc1P97496 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Smarcc1P97496 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Smarcc1P97496 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Smarcc1P97496 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Smarcc1P97496 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC31.55■■■□□ 2.64
Smarcc1P97496 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC31.55■■■□□ 2.64
Smarcc1P97496 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Smarcc1P97496 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
Smarcc1P97496 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
Smarcc1P97496 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
Smarcc1P97496 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Smarcc1P97496 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC31.52■■■□□ 2.64
Smarcc1P97496 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC31.51■■■□□ 2.63
Smarcc1P97496 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Smarcc1P97496 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC31.46■■■□□ 2.63
Smarcc1P97496 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Smarcc1P97496 Gm2415-204ENSMUST00000190235 2004 ntBASIC31.46■■■□□ 2.63
Smarcc1P97496 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC31.44■■■□□ 2.62
Smarcc1P97496 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
Smarcc1P97496 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Smarcc1P97496 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Smarcc1P97496 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Smarcc1P97496 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC31.41■■■□□ 2.62
Smarcc1P97496 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Smarcc1P97496 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
Smarcc1P97496 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
Smarcc1P97496 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
Smarcc1P97496 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC31.38■■■□□ 2.61
Smarcc1P97496 Gm11175-201ENSMUST00000116172 543 ntBASIC31.37■■■□□ 2.61
Smarcc1P97496 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Smarcc1P97496 Mir6538-201ENSMUST00000183713 110 ntBASIC31.37■■■□□ 2.61
Smarcc1P97496 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
Smarcc1P97496 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
Smarcc1P97496 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC31.35■■■□□ 2.61
Smarcc1P97496 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
Smarcc1P97496 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC31.35■■■□□ 2.61
Smarcc1P97496 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC31.34■■■□□ 2.61
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms