Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 LEU9YOR108W 1815 nt9.85□□□□□ -0.83
MSH1P25846 YPL251WYPL251W 303 nt9.84□□□□□ -0.83
MSH1P25846 TIF6YPR016C 738 nt9.84□□□□□ -0.83
MSH1P25846 YAR028WYAR028W 705 nt9.83□□□□□ -0.84
MSH1P25846 YMR244WYMR244W 1068 nt9.83□□□□□ -0.84
MSH1P25846 YHR218WYHR218W 1812 nt9.82□□□□□ -0.84
MSH1P25846 CLB6YGR109C 1143 nt9.81□□□□□ -0.84
MSH1P25846 MTG2YHR168W 1557 nt9.8□□□□□ -0.84
MSH1P25846 COQ2YNR041C 1119 nt9.8□□□□□ -0.84
MSH1P25846 FLR1YBR008C 1647 nt9.8□□□□□ -0.84
MSH1P25846 YKL133CYKL133C 1392 nt9.79□□□□□ -0.84
MSH1P25846 URA8YJR103W 1737 nt9.79□□□□□ -0.84
MSH1P25846 RPL4BYDR012W 1089 nt9.78□□□□□ -0.84
MSH1P25846 RPL4AYBR031W 1089 nt9.78□□□□□ -0.84
MSH1P25846 ALD5YER073W 1563 nt9.77□□□□□ -0.85
MSH1P25846 SSL2YIL143C 2532 nt9.77□□□□□ -0.85
MSH1P25846 HXK1YFR053C 1458 nt9.77□□□□□ -0.85
MSH1P25846 VPS62YGR141W 1404 nt9.76□□□□□ -0.85
MSH1P25846 TRT2tT(CGU)K 72 nt9.76□□□□□ -0.85
MSH1P25846 YMR103CYMR103C 363 nt9.76□□□□□ -0.85
MSH1P25846 DIG1YPL049C 1359 nt9.75□□□□□ -0.85
MSH1P25846 SSN3YPL042C 1668 nt9.75□□□□□ -0.85
MSH1P25846 YMR226CYMR226C 804 nt9.75□□□□□ -0.85
MSH1P25846 YPS3YLR121C 1527 nt9.75□□□□□ -0.85
MSH1P25846 AKR2YOR034C 2250 nt9.74□□□□□ -0.85
MSH1P25846 HXT10YFL011W 1641 nt9.74□□□□□ -0.85
MSH1P25846 HIP1YGR191W 1812 nt9.73□□□□□ -0.85
MSH1P25846 NME1NME1 340 nt9.73□□□□□ -0.85
MSH1P25846 UTH1YKR042W 1098 nt9.72□□□□□ -0.85
MSH1P25846 YHR219WYHR219W 1875 nt9.71□□□□□ -0.85
MSH1P25846 YDL086WYDL086W 822 nt9.71□□□□□ -0.86
MSH1P25846 MEP3YPR138C 1470 nt9.71□□□□□ -0.86
MSH1P25846 SAM2YDR502C 1155 nt9.69□□□□□ -0.86
MSH1P25846 RBG2YGR173W 1107 nt9.69□□□□□ -0.86
MSH1P25846 DLD2YDL178W 1593 nt9.68□□□□□ -0.86
MSH1P25846 YLR111WYLR111W 333 nt9.68□□□□□ -0.86
MSH1P25846 BSP1YPR171W 1731 nt9.68□□□□□ -0.86
MSH1P25846 RPS14BYJL191W 417 nt9.66□□□□□ -0.86
MSH1P25846 MDM35YKL053C-A 261 nt9.66□□□□□ -0.86
MSH1P25846 PHO23YNL097C 993 nt9.66□□□□□ -0.86
MSH1P25846 SDH5YOL071W 489 nt9.66□□□□□ -0.86
MSH1P25846 HEM13YDR044W 987 nt9.65□□□□□ -0.86
MSH1P25846 MET28YIR017C 564 nt9.65□□□□□ -0.86
MSH1P25846 LSR1LSR1 1175 nt9.64□□□□□ -0.87
MSH1P25846 YOR072WYOR072W 315 nt9.64□□□□□ -0.87
MSH1P25846 NRT1YOR071C 1797 nt9.64□□□□□ -0.87
MSH1P25846 ALP1YNL270C 1722 nt9.62□□□□□ -0.87
MSH1P25846 TSC10YBR265W 963 nt9.61□□□□□ -0.87
MSH1P25846 RAD23YEL037C 1197 nt9.6□□□□□ -0.87
MSH1P25846 FIT3YOR383C 615 nt9.58□□□□□ -0.88
MSH1P25846 MEX67YPL169C 1800 nt9.58□□□□□ -0.88
MSH1P25846 TIM44YIL022W 1296 nt9.57□□□□□ -0.88
MSH1P25846 AIM1YAL046C 357 nt9.57□□□□□ -0.88
MSH1P25846 PCP1YGR101W 1041 nt9.56□□□□□ -0.88
MSH1P25846 AGP3YFL055W 1677 nt9.55□□□□□ -0.88
MSH1P25846 SEC61YLR378C 1443 nt9.54□□□□□ -0.88
MSH1P25846 DLD3YEL071W 1491 nt9.53□□□□□ -0.88
MSH1P25846 YGR012WYGR012W 1182 nt9.52□□□□□ -0.89
MSH1P25846 TAT2YOL020W 1779 nt9.52□□□□□ -0.89
MSH1P25846 RPD3YNL330C 1302 nt9.52□□□□□ -0.89
MSH1P25846 CWP2YKL096W-A 279 nt9.51□□□□□ -0.89
MSH1P25846 YLR046CYLR046C 813 nt9.5□□□□□ -0.89
MSH1P25846 NBA1YOL070C 1506 nt9.5□□□□□ -0.89
MSH1P25846 BNI5YNL166C 1347 nt9.5□□□□□ -0.89
MSH1P25846 MDL2YPL270W 2322 nt9.49□□□□□ -0.89
MSH1P25846 ITR2YOL103W 1830 nt9.49□□□□□ -0.89
MSH1P25846 THI72YOR192C 1800 nt9.47□□□□□ -0.89
MSH1P25846 FUB1YCR076C 753 nt9.47□□□□□ -0.89
MSH1P25846 YER188WYER188W 720 nt9.47□□□□□ -0.89
MSH1P25846 RIB3YDR487C 627 nt9.46□□□□□ -0.9
MSH1P25846 OXA1YER154W 1209 nt9.46□□□□□ -0.9
MSH1P25846 OSH7YHR001W 1314 nt9.45□□□□□ -0.9
MSH1P25846 YLR279WYLR279W 390 nt9.44□□□□□ -0.9
MSH1P25846 YMR262WYMR262W 942 nt9.44□□□□□ -0.9
MSH1P25846 GID7YCL039W 2238 nt9.44□□□□□ -0.9
MSH1P25846 YPL222C-AYPL222C-A 246 nt9.43□□□□□ -0.9
MSH1P25846 tD(GUC)BtD(GUC)B 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)DtD(GUC)D 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)G1tD(GUC)G1 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)G2tD(GUC)G2 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)I1tD(GUC)I1 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)I2tD(GUC)I2 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)J1tD(GUC)J1 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)J2tD(GUC)J2 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)J3tD(GUC)J3 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)J4tD(GUC)J4 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)KtD(GUC)K 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)L1tD(GUC)L1 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)L2tD(GUC)L2 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)MtD(GUC)M 72 nt9.41□□□□□ -0.9
MSH1P25846 tD(GUC)OtD(GUC)O 72 nt9.41□□□□□ -0.9
MSH1P25846 TIP1YBR067C 633 nt9.41□□□□□ -0.9
MSH1P25846 DPL1YDR294C 1770 nt9.4□□□□□ -0.9
MSH1P25846 YLR437C-AYLR437C-A 228 nt9.4□□□□□ -0.9
MSH1P25846 LEU4YNL104C 1860 nt9.39□□□□□ -0.91
MSH1P25846 RIM2YBR192W 1134 nt9.39□□□□□ -0.91
MSH1P25846 MTO1YGL236C 2010 nt9.39□□□□□ -0.91
MSH1P25846 FET5YFL041W 1869 nt9.38□□□□□ -0.91
MSH1P25846 MSC1YML128C 1542 nt9.38□□□□□ -0.91
MSH1P25846 SOL2YCR073W-A 948 nt9.38□□□□□ -0.91
Retrieved 100 of 7,029 protein–RNA pairs in 8.5 ms