Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 AC060766.5-201ENST00000590539 871 ntBASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 FAM21FP-204ENST00000608637 956 ntBASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 HLA-B-256ENST00000639848 1089 ntBASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDHGA1Q9Y5H4 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 AL359736.2-201ENST00000621992 437 ntBASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDHGA1Q9Y5H4 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDHGA1Q9Y5H4 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 AC008403.3-201ENST00000598924 454 ntBASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PCDHGA1Q9Y5H4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.22■□□□□ 0.83
PCDHGA1Q9Y5H4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 AC061975.6-201ENST00000579045 1553 ntBASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 CDV3P1-201ENST00000471403 739 ntBASIC20.21■□□□□ 0.83
PCDHGA1Q9Y5H4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms