Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RNF39Q9H2S5 AC127496.7-201ENST00000625110 1798 ntBASIC23.06■■□□□ 1.28
RNF39Q9H2S5 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.06■■□□□ 1.28
RNF39Q9H2S5 AC026471.6-201ENST00000622954 1905 ntBASIC23.06■■□□□ 1.28
RNF39Q9H2S5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RNF39Q9H2S5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RNF39Q9H2S5 KRT18P20-201ENST00000548986 1279 ntBASIC23.06■■□□□ 1.28
RNF39Q9H2S5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.06■■□□□ 1.28
RNF39Q9H2S5 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.06■■□□□ 1.28
RNF39Q9H2S5 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
RNF39Q9H2S5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
RNF39Q9H2S5 AC092053.2-201ENST00000640557 1818 ntBASIC23.05■■□□□ 1.28
RNF39Q9H2S5 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 AL157392.4-201ENST00000609756 345 ntBASIC23.05■■□□□ 1.28
RNF39Q9H2S5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC23.05■■□□□ 1.28
RNF39Q9H2S5 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.04■■□□□ 1.28
RNF39Q9H2S5 CNN2P6-201ENST00000439038 900 ntBASIC23.04■■□□□ 1.28
RNF39Q9H2S5 OSTCP1-202ENST00000522287 1195 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 AC008507.2-201ENST00000588402 1176 ntBASIC23.04■■□□□ 1.28
RNF39Q9H2S5 AC110792.4-201ENST00000609843 298 ntBASIC23.04■■□□□ 1.28
RNF39Q9H2S5 AL109923.1-201ENST00000618799 583 ntBASIC23.04■■□□□ 1.28
RNF39Q9H2S5 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 AC003102.1-202ENST00000563394 1796 ntBASIC23.04■■□□□ 1.28
RNF39Q9H2S5 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
RNF39Q9H2S5 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 AC007322.1-201ENST00000426983 750 ntBASIC23.03■■□□□ 1.28
RNF39Q9H2S5 AC007919.2-201ENST00000444110 511 ntBASIC23.03■■□□□ 1.28
RNF39Q9H2S5 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 AC231657.2-201ENST00000624556 255 ntBASIC23.03■■□□□ 1.28
RNF39Q9H2S5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RNF39Q9H2S5 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 UPF3AP2-201ENST00000457924 1132 ntBASIC23.02■■□□□ 1.28
RNF39Q9H2S5 QTRT2-209ENST00000479882 1196 ntTSL 2 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 AC069503.1-202ENST00000616576 642 ntBASIC23.02■■□□□ 1.28
RNF39Q9H2S5 AC010536.3-201ENST00000620306 533 ntBASIC23.02■■□□□ 1.28
RNF39Q9H2S5 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 PARP1-210ENST00000629232 477 ntTSL 5 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 METTL15-211ENST00000634762 718 ntTSL 5 BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RNF39Q9H2S5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms