Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TTC28Q96AY4 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TTC28Q96AY4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TTC28Q96AY4 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TTC28Q96AY4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TTC28Q96AY4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.73■■□□□ 1.07
TTC28Q96AY4 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TTC28Q96AY4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TTC28Q96AY4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.73■■□□□ 1.07
TTC28Q96AY4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC21.73■■□□□ 1.07
TTC28Q96AY4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.73■■□□□ 1.07
TTC28Q96AY4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
TTC28Q96AY4 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.73■■□□□ 1.07
TTC28Q96AY4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TTC28Q96AY4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.73■■□□□ 1.07
TTC28Q96AY4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.73■■□□□ 1.07
TTC28Q96AY4 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.72■■□□□ 1.07
TTC28Q96AY4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.72■■□□□ 1.07
TTC28Q96AY4 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.72■■□□□ 1.07
TTC28Q96AY4 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.72■■□□□ 1.07
TTC28Q96AY4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
TTC28Q96AY4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.72■■□□□ 1.07
TTC28Q96AY4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
TTC28Q96AY4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TTC28Q96AY4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
TTC28Q96AY4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.71■■□□□ 1.07
TTC28Q96AY4 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.71■■□□□ 1.07
TTC28Q96AY4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.71■■□□□ 1.07
TTC28Q96AY4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TTC28Q96AY4 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
TTC28Q96AY4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TTC28Q96AY4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
TTC28Q96AY4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TTC28Q96AY4 MMP23A-201ENST00000234610 1017 ntBASIC21.7■■□□□ 1.06
TTC28Q96AY4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TTC28Q96AY4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.7■■□□□ 1.06
TTC28Q96AY4 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TTC28Q96AY4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
TTC28Q96AY4 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TTC28Q96AY4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TTC28Q96AY4 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
TTC28Q96AY4 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
TTC28Q96AY4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
TTC28Q96AY4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
TTC28Q96AY4 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TTC28Q96AY4 AL450487.1-201ENST00000426799 995 ntBASIC21.7■■□□□ 1.06
TTC28Q96AY4 AC100791.3-201ENST00000617619 330 ntBASIC21.7■■□□□ 1.06
TTC28Q96AY4 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.7■■□□□ 1.06
TTC28Q96AY4 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.69■■□□□ 1.06
TTC28Q96AY4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.69■■□□□ 1.06
TTC28Q96AY4 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.69■■□□□ 1.06
TTC28Q96AY4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TTC28Q96AY4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
TTC28Q96AY4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TTC28Q96AY4 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 AC004263.2-201ENST00000617183 678 ntBASIC21.68■■□□□ 1.06
TTC28Q96AY4 AC023511.2-201ENST00000618803 211 ntBASIC21.68■■□□□ 1.06
TTC28Q96AY4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TTC28Q96AY4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TTC28Q96AY4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TTC28Q96AY4 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TTC28Q96AY4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TTC28Q96AY4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TTC28Q96AY4 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.68■■□□□ 1.06
TTC28Q96AY4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TTC28Q96AY4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TTC28Q96AY4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TTC28Q96AY4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms