Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
UBE3BQ7Z3V4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 ECEL1P1-201ENST00000373592 1742 ntBASIC26.33■■□□□ 1.81
UBE3BQ7Z3V4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
UBE3BQ7Z3V4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
UBE3BQ7Z3V4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
UBE3BQ7Z3V4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 SLC29A4P1-201ENST00000398760 971 ntBASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 AC016405.3-201ENST00000607710 860 ntBASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 AC243732.1-201ENST00000612648 864 ntBASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
UBE3BQ7Z3V4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 BET1L-204ENST00000410108 637 ntTSL 3 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC26.29■■□□□ 1.8
UBE3BQ7Z3V4 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 APTR-205ENST00000447009 902 ntTSL 2 BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 AC093787.1-201ENST00000450396 207 ntBASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
UBE3BQ7Z3V4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 AC098934.4-201ENST00000564127 592 ntBASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
UBE3BQ7Z3V4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
UBE3BQ7Z3V4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
UBE3BQ7Z3V4 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
UBE3BQ7Z3V4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC26.26■■□□□ 1.79
UBE3BQ7Z3V4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
UBE3BQ7Z3V4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms