Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 KRT18P21-201ENST00000515767 1272 ntBASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 AL591742.1-201ENST00000604433 565 ntBASIC17.41■□□□□ 0.38
CSPG4Q6UVK1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 AL034346.1-201ENST00000568244 1277 ntBASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 AC008403.3-201ENST00000598924 454 ntBASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 AP006587.3-201ENST00000525742 1516 ntBASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
CSPG4Q6UVK1 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 AL355472.2-201ENST00000422958 438 ntBASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 SNORA78-201ENST00000459373 127 ntBASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
CSPG4Q6UVK1 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 RPPH1-201ENST00000516869 333 ntBASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 AL359736.2-201ENST00000621992 437 ntBASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.39■□□□□ 0.37
CSPG4Q6UVK1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 KRT17P1-201ENST00000399211 1546 ntBASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CSPG4Q6UVK1 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 PPOX-219ENST00000544598 813 ntTSL 2 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 CYP2T3P-201ENST00000601990 817 ntBASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CSPG4Q6UVK1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms