Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PPP4R4Q6NUP7 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
PPP4R4Q6NUP7 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
PPP4R4Q6NUP7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PPP4R4Q6NUP7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 MIR638-201ENST00000385237 100 ntBASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 AC106739.1-201ENST00000617035 715 ntBASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 AC019069.1-201ENST00000610008 1333 ntBASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
PPP4R4Q6NUP7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
PPP4R4Q6NUP7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms