Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC58Q4VC31 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 AC239859.2-201ENST00000444165 318 ntBASIC18.71■□□□□ 0.59
CCDC58Q4VC31 AC010141.3-201ENST00000456659 717 ntBASIC18.71■□□□□ 0.59
CCDC58Q4VC31 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CCDC58Q4VC31 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCDC58Q4VC31 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCDC58Q4VC31 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 AC087289.5-201ENST00000586076 3175 ntBASIC18.7■□□□□ 0.58
CCDC58Q4VC31 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 FEM1AP1-201ENST00000431297 1995 ntBASIC18.7■□□□□ 0.58
CCDC58Q4VC31 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC58Q4VC31 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 AC006455.2-201ENST00000429931 906 ntBASIC18.69■□□□□ 0.58
CCDC58Q4VC31 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC58Q4VC31 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 LETM1P2-201ENST00000597330 2178 ntBASIC18.68■□□□□ 0.58
CCDC58Q4VC31 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC58Q4VC31 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 LINC01006-201ENST00000333319 2292 ntBASIC18.67■□□□□ 0.58
CCDC58Q4VC31 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC58Q4VC31 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms