Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 AC004911.1-201ENST00000416316 871 ntBASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PTCHD3Q3KNS1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 FEM1AP4-201ENST00000443167 1987 ntBASIC20.54■□□□□ 0.88
PTCHD3Q3KNS1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 AC005229.4-201ENST00000610085 2198 ntBASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.53■□□□□ 0.88
PTCHD3Q3KNS1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 RARRES2P11-201ENST00000635158 484 ntBASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 AF106564.1-201ENST00000607058 2553 ntBASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.52■□□□□ 0.88
PTCHD3Q3KNS1 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
PTCHD3Q3KNS1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 AC090192.1-201ENST00000517740 490 ntBASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD3Q3KNS1 AL024507.2-201ENST00000606070 2574 ntBASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 AC004854.2-201ENST00000608450 1441 ntBASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.5■□□□□ 0.87
PTCHD3Q3KNS1 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms