Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDH1Q08174 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PCDH1Q08174 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDH1Q08174 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.28■□□□□ 0.84
PCDH1Q08174 AC005229.4-201ENST00000610085 2198 ntBASIC20.28■□□□□ 0.84
PCDH1Q08174 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.28■□□□□ 0.84
PCDH1Q08174 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.28■□□□□ 0.84
PCDH1Q08174 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.28■□□□□ 0.84
PCDH1Q08174 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.28■□□□□ 0.84
PCDH1Q08174 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDH1Q08174 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH1Q08174 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH1Q08174 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PCDH1Q08174 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH1Q08174 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
PCDH1Q08174 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH1Q08174 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH1Q08174 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PCDH1Q08174 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCDH1Q08174 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDH1Q08174 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDH1Q08174 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDH1Q08174 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 LINC02228-203ENST00000641970 1355 ntBASIC20.26■□□□□ 0.83
PCDH1Q08174 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PCDH1Q08174 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PCDH1Q08174 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.26■□□□□ 0.83
PCDH1Q08174 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH1Q08174 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDH1Q08174 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.25■□□□□ 0.83
PCDH1Q08174 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
PCDH1Q08174 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.25■□□□□ 0.83
PCDH1Q08174 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
PCDH1Q08174 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PCDH1Q08174 AC019069.1-201ENST00000610008 1333 ntBASIC20.25■□□□□ 0.83
PCDH1Q08174 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH1Q08174 KRT87P-202ENST00000534226 1464 ntBASIC20.24■□□□□ 0.83
PCDH1Q08174 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
PCDH1Q08174 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
PCDH1Q08174 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDH1Q08174 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.24■□□□□ 0.83
PCDH1Q08174 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH1Q08174 TERF1P2-201ENST00000583350 1212 ntBASIC20.24■□□□□ 0.83
PCDH1Q08174 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.24■□□□□ 0.83
PCDH1Q08174 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH1Q08174 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
PCDH1Q08174 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.24■□□□□ 0.83
PCDH1Q08174 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PCDH1Q08174 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH1Q08174 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH1Q08174 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH1Q08174 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.23■□□□□ 0.83
PCDH1Q08174 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH1Q08174 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH1Q08174 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH1Q08174 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
PCDH1Q08174 YBX1P1-201ENST00000445822 960 ntBASIC20.23■□□□□ 0.83
PCDH1Q08174 AC079140.4-201ENST00000507448 529 ntBASIC20.23■□□□□ 0.83
PCDH1Q08174 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PCDH1Q08174 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.22■□□□□ 0.83
PCDH1Q08174 AF106564.1-201ENST00000607058 2553 ntBASIC20.22■□□□□ 0.83
PCDH1Q08174 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PCDH1Q08174 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.22■□□□□ 0.83
PCDH1Q08174 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.22■□□□□ 0.83
PCDH1Q08174 AC138907.5-202ENST00000569484 235 ntBASIC20.22■□□□□ 0.83
PCDH1Q08174 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH1Q08174 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH1Q08174 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.22■□□□□ 0.83
PCDH1Q08174 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH1Q08174 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH1Q08174 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
PCDH1Q08174 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH1Q08174 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PCDH1Q08174 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.21■□□□□ 0.83
PCDH1Q08174 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.21■□□□□ 0.83
PCDH1Q08174 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.21■□□□□ 0.83
PCDH1Q08174 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH1Q08174 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH1Q08174 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PCDH1Q08174 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDH1Q08174 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.21■□□□□ 0.83
PCDH1Q08174 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms