Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.22■■□□□ 1.31
PEX3P56589 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.22■■□□□ 1.31
PEX3P56589 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 POU5F1P4-201ENST00000413175 1085 ntBASIC23.22■■□□□ 1.31
PEX3P56589 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.22■■□□□ 1.31
PEX3P56589 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC23.22■■□□□ 1.31
PEX3P56589 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC23.22■■□□□ 1.31
PEX3P56589 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.22■■□□□ 1.31
PEX3P56589 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PEX3P56589 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 KRT18P11-201ENST00000435214 1283 ntBASIC23.21■■□□□ 1.31
PEX3P56589 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC23.21■■□□□ 1.31
PEX3P56589 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.21■■□□□ 1.31
PEX3P56589 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.21■■□□□ 1.31
PEX3P56589 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.21■■□□□ 1.31
PEX3P56589 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
PEX3P56589 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PEX3P56589 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.2■■□□□ 1.3
PEX3P56589 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.2■■□□□ 1.3
PEX3P56589 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
PEX3P56589 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.2■■□□□ 1.3
PEX3P56589 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
PEX3P56589 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.2■■□□□ 1.3
PEX3P56589 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
PEX3P56589 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
PEX3P56589 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.2■■□□□ 1.3
PEX3P56589 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC23.2■■□□□ 1.3
PEX3P56589 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC23.2■■□□□ 1.3
PEX3P56589 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PEX3P56589 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.3
PEX3P56589 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
PEX3P56589 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
PEX3P56589 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PEX3P56589 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PEX3P56589 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PEX3P56589 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.19■■□□□ 1.3
PEX3P56589 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PEX3P56589 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
PEX3P56589 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC23.19■■□□□ 1.3
PEX3P56589 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.19■■□□□ 1.3
PEX3P56589 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
PEX3P56589 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.19■■□□□ 1.3
PEX3P56589 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC23.19■■□□□ 1.3
PEX3P56589 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.19■■□□□ 1.3
PEX3P56589 TFG-210ENST00000620299 1289 ntTSL 5 BASIC23.19■■□□□ 1.3
PEX3P56589 MYCNOS-205ENST00000641950 531 ntBASIC23.19■■□□□ 1.3
PEX3P56589 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.19■■□□□ 1.3
PEX3P56589 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.19■■□□□ 1.3
PEX3P56589 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
PEX3P56589 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
PEX3P56589 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 AC120498.10-201ENST00000621827 505 ntBASIC23.18■■□□□ 1.3
PEX3P56589 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
PEX3P56589 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC23.18■■□□□ 1.3
PEX3P56589 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
PEX3P56589 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.18■■□□□ 1.3
PEX3P56589 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
PEX3P56589 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.17■■□□□ 1.3
PEX3P56589 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.17■■□□□ 1.3
PEX3P56589 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.17■■□□□ 1.3
PEX3P56589 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
PEX3P56589 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.17■■□□□ 1.3
PEX3P56589 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.17■■□□□ 1.3
PEX3P56589 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.17■■□□□ 1.3
PEX3P56589 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
PEX3P56589 BID-214ENST00000617586 542 ntTSL 5 BASIC23.17■■□□□ 1.3
PEX3P56589 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.17■■□□□ 1.3
PEX3P56589 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC23.17■■□□□ 1.3
PEX3P56589 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
PEX3P56589 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.16■■□□□ 1.3
PEX3P56589 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms