Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LIM2P55344 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LIM2P55344 AC005229.4-201ENST00000610085 2198 ntBASIC19.98■□□□□ 0.79
LIM2P55344 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.97■□□□□ 0.79
LIM2P55344 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.97■□□□□ 0.79
LIM2P55344 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.97■□□□□ 0.79
LIM2P55344 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.97■□□□□ 0.79
LIM2P55344 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.97■□□□□ 0.79
LIM2P55344 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.97■□□□□ 0.79
LIM2P55344 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.97■□□□□ 0.79
LIM2P55344 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.97■□□□□ 0.79
LIM2P55344 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.97■□□□□ 0.79
LIM2P55344 KRT18P61-201ENST00000585825 1298 ntBASIC19.97■□□□□ 0.79
LIM2P55344 NTF6G-201ENST00000591094 616 ntBASIC19.97■□□□□ 0.79
LIM2P55344 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 AC104187.1-201ENST00000607510 612 ntBASIC19.97■□□□□ 0.79
LIM2P55344 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
LIM2P55344 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.97■□□□□ 0.79
LIM2P55344 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.97■□□□□ 0.79
LIM2P55344 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
LIM2P55344 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIM2P55344 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.96■□□□□ 0.79
LIM2P55344 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIM2P55344 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.96■□□□□ 0.79
LIM2P55344 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.96■□□□□ 0.79
LIM2P55344 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.96■□□□□ 0.79
LIM2P55344 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
LIM2P55344 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIM2P55344 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.96■□□□□ 0.79
LIM2P55344 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
LIM2P55344 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIM2P55344 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
LIM2P55344 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.96■□□□□ 0.79
LIM2P55344 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.79
LIM2P55344 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.95■□□□□ 0.78
LIM2P55344 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
LIM2P55344 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.95■□□□□ 0.78
LIM2P55344 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.95■□□□□ 0.78
LIM2P55344 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.95■□□□□ 0.78
LIM2P55344 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.95■□□□□ 0.78
LIM2P55344 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.95■□□□□ 0.78
LIM2P55344 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.95■□□□□ 0.78
LIM2P55344 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
LIM2P55344 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
LIM2P55344 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 KRT18P5-201ENST00000436075 1291 ntBASIC19.94■□□□□ 0.78
LIM2P55344 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.94■□□□□ 0.78
LIM2P55344 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.94■□□□□ 0.78
LIM2P55344 AC138907.5-202ENST00000569484 235 ntBASIC19.94■□□□□ 0.78
LIM2P55344 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.94■□□□□ 0.78
LIM2P55344 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.94■□□□□ 0.78
LIM2P55344 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.94■□□□□ 0.78
LIM2P55344 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
LIM2P55344 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIM2P55344 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIM2P55344 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
LIM2P55344 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
LIM2P55344 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
LIM2P55344 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
LIM2P55344 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.93■□□□□ 0.78
LIM2P55344 AL162430.1-201ENST00000480705 870 ntBASIC19.93■□□□□ 0.78
LIM2P55344 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
LIM2P55344 Z98882.1-201ENST00000622160 2253 ntBASIC19.93■□□□□ 0.78
LIM2P55344 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms