Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.99
RPA3P35244 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.2■□□□□ 0.98
RPA3P35244 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RPA3P35244 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RPA3P35244 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.2■□□□□ 0.98
RPA3P35244 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
RPA3P35244 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
RPA3P35244 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
RPA3P35244 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RPA3P35244 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.2■□□□□ 0.98
RPA3P35244 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.2■□□□□ 0.98
RPA3P35244 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
RPA3P35244 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
RPA3P35244 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.2■□□□□ 0.98
RPA3P35244 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.2■□□□□ 0.98
RPA3P35244 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPA3P35244 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RPA3P35244 AC027682.1-201ENST00000562846 899 ntBASIC21.19■□□□□ 0.98
RPA3P35244 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
RPA3P35244 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.19■□□□□ 0.98
RPA3P35244 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPA3P35244 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPA3P35244 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RPA3P35244 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPA3P35244 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPA3P35244 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.18■□□□□ 0.98
RPA3P35244 AP001330.3-201ENST00000520123 633 ntBASIC21.18■□□□□ 0.98
RPA3P35244 AF213884.3-201ENST00000563833 479 ntBASIC21.18■□□□□ 0.98
RPA3P35244 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RPA3P35244 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.18■□□□□ 0.98
RPA3P35244 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
RPA3P35244 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RPA3P35244 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RPA3P35244 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RPA3P35244 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
RPA3P35244 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RPA3P35244 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPA3P35244 MIR638-201ENST00000385237 100 ntBASIC21.17■□□□□ 0.98
RPA3P35244 AC099791.1-201ENST00000416440 715 ntBASIC21.17■□□□□ 0.98
RPA3P35244 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.17■□□□□ 0.98
RPA3P35244 AC142381.2-201ENST00000566120 298 ntBASIC21.17■□□□□ 0.98
RPA3P35244 AC126544.1-201ENST00000580842 1059 ntBASIC21.17■□□□□ 0.98
RPA3P35244 AC005837.3-201ENST00000612163 286 ntBASIC21.17■□□□□ 0.98
RPA3P35244 AC068587.7-201ENST00000641602 218 ntBASIC21.17■□□□□ 0.98
RPA3P35244 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPA3P35244 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.17■□□□□ 0.98
RPA3P35244 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
RPA3P35244 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.17■□□□□ 0.98
RPA3P35244 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPA3P35244 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPA3P35244 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.17■□□□□ 0.98
RPA3P35244 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RPA3P35244 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RPA3P35244 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RPA3P35244 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.16■□□□□ 0.98
RPA3P35244 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.16■□□□□ 0.98
RPA3P35244 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.16■□□□□ 0.98
RPA3P35244 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
RPA3P35244 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
RPA3P35244 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.16■□□□□ 0.98
RPA3P35244 AC087239.1-201ENST00000622671 572 ntBASIC21.16■□□□□ 0.98
RPA3P35244 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RPA3P35244 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPA3P35244 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RPA3P35244 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPA3P35244 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RPA3P35244 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPA3P35244 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.15■□□□□ 0.98
RPA3P35244 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RPA3P35244 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RPA3P35244 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
RPA3P35244 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC21.15■□□□□ 0.98
RPA3P35244 AL031432.3-201ENST00000607698 485 ntBASIC21.15■□□□□ 0.98
RPA3P35244 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RPA3P35244 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.15■□□□□ 0.98
RPA3P35244 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPA3P35244 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPA3P35244 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.14■□□□□ 0.98
RPA3P35244 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
RPA3P35244 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPA3P35244 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RPA3P35244 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RPA3P35244 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms