Protein–RNA interactions for Protein: P22090

RPS4Y1, 40S ribosomal protein S4, Y isoform 1, humanhuman

Known RBP Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y1P22090 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y1P22090 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.28■□□□□ 0.68
RPS4Y1P22090 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y1P22090 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y1P22090 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y1P22090 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y1P22090 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y1P22090 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RPS4Y1P22090 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
RPS4Y1P22090 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RPS4Y1P22090 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RPS4Y1P22090 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RPS4Y1P22090 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RPS4Y1P22090 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
RPS4Y1P22090 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.27■□□□□ 0.67
RPS4Y1P22090 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.27■□□□□ 0.67
RPS4Y1P22090 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
RPS4Y1P22090 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
RPS4Y1P22090 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.27■□□□□ 0.67
RPS4Y1P22090 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RPS4Y1P22090 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RPS4Y1P22090 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RPS4Y1P22090 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RPS4Y1P22090 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RPS4Y1P22090 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 AC061975.6-201ENST00000579045 1553 ntBASIC19.25■□□□□ 0.67
RPS4Y1P22090 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.25■□□□□ 0.67
RPS4Y1P22090 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RPS4Y1P22090 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 LINC02228-203ENST00000641970 1355 ntBASIC19.24■□□□□ 0.67
RPS4Y1P22090 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 AC123595.1-201ENST00000440769 1046 ntBASIC19.24■□□□□ 0.67
RPS4Y1P22090 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
RPS4Y1P22090 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RPS4Y1P22090 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
RPS4Y1P22090 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
RPS4Y1P22090 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
RPS4Y1P22090 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 AC138907.5-202ENST00000569484 235 ntBASIC19.23■□□□□ 0.67
RPS4Y1P22090 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.23■□□□□ 0.67
RPS4Y1P22090 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RPS4Y1P22090 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 238.7 ms