Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 SOX15-203ENST00000570788 1093 ntBASIC19.17■□□□□ 0.66
SPTA1P02549 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.17■□□□□ 0.66
SPTA1P02549 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.17■□□□□ 0.66
SPTA1P02549 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 AC142381.3-201ENST00000568208 1670 ntBASIC19.17■□□□□ 0.66
SPTA1P02549 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SPTA1P02549 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.17■□□□□ 0.66
SPTA1P02549 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SPTA1P02549 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.16■□□□□ 0.66
SPTA1P02549 LSM12P1-201ENST00000411836 588 ntBASIC19.16■□□□□ 0.66
SPTA1P02549 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SPTA1P02549 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPTA1P02549 FAM197Y4-202ENST00000622692 608 ntBASIC19.16■□□□□ 0.66
SPTA1P02549 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPTA1P02549 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPTA1P02549 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPTA1P02549 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.16■□□□□ 0.66
SPTA1P02549 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.16■□□□□ 0.66
SPTA1P02549 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.16■□□□□ 0.66
SPTA1P02549 AC243732.1-201ENST00000612648 864 ntBASIC19.16■□□□□ 0.66
SPTA1P02549 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SPTA1P02549 LINC01124-201ENST00000409786 2117 ntBASIC19.16■□□□□ 0.66
SPTA1P02549 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPTA1P02549 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SPTA1P02549 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.15■□□□□ 0.66
SPTA1P02549 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.15■□□□□ 0.66
SPTA1P02549 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
SPTA1P02549 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SPTA1P02549 AC060766.5-201ENST00000590539 871 ntBASIC19.15■□□□□ 0.66
SPTA1P02549 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SPTA1P02549 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.15■□□□□ 0.66
SPTA1P02549 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPTA1P02549 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SPTA1P02549 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.15■□□□□ 0.66
SPTA1P02549 AL355472.2-201ENST00000422958 438 ntBASIC19.15■□□□□ 0.66
SPTA1P02549 KRT18P35-201ENST00000510488 1269 ntBASIC19.15■□□□□ 0.66
SPTA1P02549 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SPTA1P02549 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.15■□□□□ 0.66
SPTA1P02549 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPTA1P02549 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SPTA1P02549 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
SPTA1P02549 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.14■□□□□ 0.66
SPTA1P02549 MIR4785-201ENST00000585005 73 ntBASIC19.14■□□□□ 0.66
SPTA1P02549 AP001412.1-201ENST00000608405 714 ntBASIC19.14■□□□□ 0.66
SPTA1P02549 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
SPTA1P02549 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SPTA1P02549 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.14■□□□□ 0.65
SPTA1P02549 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.14■□□□□ 0.65
SPTA1P02549 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
SPTA1P02549 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.14■□□□□ 0.65
SPTA1P02549 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.14■□□□□ 0.65
SPTA1P02549 RN7SL850P-201ENST00000579959 291 ntBASIC19.14■□□□□ 0.65
SPTA1P02549 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.14■□□□□ 0.65
SPTA1P02549 AC008175.2-201ENST00000612840 297 ntBASIC19.14■□□□□ 0.65
SPTA1P02549 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
SPTA1P02549 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SPTA1P02549 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC19.13■□□□□ 0.65
SPTA1P02549 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SPTA1P02549 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
SPTA1P02549 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SPTA1P02549 TMPOP1-202ENST00000424642 1267 ntBASIC19.13■□□□□ 0.65
SPTA1P02549 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SPTA1P02549 AC233702.5-201ENST00000584107 538 ntBASIC19.13■□□□□ 0.65
SPTA1P02549 HLA-B-256ENST00000639848 1089 ntBASIC19.13■□□□□ 0.65
SPTA1P02549 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SPTA1P02549 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.13■□□□□ 0.65
SPTA1P02549 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SPTA1P02549 POM121L13P-201ENST00000422362 380 ntBASIC19.13■□□□□ 0.65
SPTA1P02549 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SPTA1P02549 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
SPTA1P02549 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.13■□□□□ 0.65
SPTA1P02549 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
SPTA1P02549 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.13■□□□□ 0.65
SPTA1P02549 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SPTA1P02549 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SPTA1P02549 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.12■□□□□ 0.65
SPTA1P02549 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SPTA1P02549 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
SPTA1P02549 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SPTA1P02549 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.12■□□□□ 0.65
SPTA1P02549 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.12■□□□□ 0.65
SPTA1P02549 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SPTA1P02549 LINC00526-201ENST00000581067 1875 ntBASIC19.12■□□□□ 0.65
SPTA1P02549 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SPTA1P02549 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.12■□□□□ 0.65
SPTA1P02549 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC19.12■□□□□ 0.65
SPTA1P02549 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms