Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SIX3O95343 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX3O95343 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SIX3O95343 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX3O95343 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX3O95343 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.55■□□□□ 0.88
SIX3O95343 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX3O95343 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SIX3O95343 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.55■□□□□ 0.88
SIX3O95343 AL031432.3-201ENST00000607698 485 ntBASIC20.55■□□□□ 0.88
SIX3O95343 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX3O95343 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX3O95343 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.55■□□□□ 0.88
SIX3O95343 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SIX3O95343 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SIX3O95343 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 AC005224.4-201ENST00000583262 1652 ntBASIC20.54■□□□□ 0.88
SIX3O95343 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SIX3O95343 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.54■□□□□ 0.88
SIX3O95343 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.54■□□□□ 0.88
SIX3O95343 RASA4CP-201ENST00000424092 1398 ntBASIC20.54■□□□□ 0.88
SIX3O95343 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
SIX3O95343 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIX3O95343 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX3O95343 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SIX3O95343 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SIX3O95343 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIX3O95343 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX3O95343 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX3O95343 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SIX3O95343 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.53■□□□□ 0.88
SIX3O95343 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.53■□□□□ 0.88
SIX3O95343 AL136967.2-201ENST00000623968 743 ntBASIC20.53■□□□□ 0.88
SIX3O95343 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX3O95343 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIX3O95343 AC073130.3-201ENST00000624389 2278 ntBASIC20.53■□□□□ 0.88
SIX3O95343 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SIX3O95343 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.53■□□□□ 0.88
SIX3O95343 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SIX3O95343 BX005040.4-201ENST00000637145 1518 ntBASIC20.53■□□□□ 0.88
SIX3O95343 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX3O95343 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.52■□□□□ 0.88
SIX3O95343 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.52■□□□□ 0.88
SIX3O95343 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX3O95343 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX3O95343 MIR572-201ENST00000384983 95 ntBASIC20.52■□□□□ 0.88
SIX3O95343 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX3O95343 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SIX3O95343 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
SIX3O95343 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIX3O95343 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.87
SIX3O95343 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIX3O95343 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
SIX3O95343 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SIX3O95343 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX3O95343 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.51■□□□□ 0.87
SIX3O95343 AC091305.1-201ENST00000479476 895 ntBASIC20.51■□□□□ 0.87
SIX3O95343 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX3O95343 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIX3O95343 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.51■□□□□ 0.87
SIX3O95343 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.51■□□□□ 0.87
SIX3O95343 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX3O95343 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX3O95343 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.5■□□□□ 0.87
SIX3O95343 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.5■□□□□ 0.87
SIX3O95343 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SIX3O95343 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SIX3O95343 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.5■□□□□ 0.87
SIX3O95343 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.49■□□□□ 0.87
SIX3O95343 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX3O95343 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX3O95343 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SIX3O95343 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms