Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.59■□□□□ 0.89
SDC3O75056 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SDC3O75056 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.59■□□□□ 0.89
SDC3O75056 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.59■□□□□ 0.89
SDC3O75056 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
SDC3O75056 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.59■□□□□ 0.89
SDC3O75056 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.59■□□□□ 0.89
SDC3O75056 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 C9orf163-202ENST00000624034 2573 ntBASIC20.59■□□□□ 0.89
SDC3O75056 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 AC010980.2-201ENST00000587099 1412 ntBASIC20.59■□□□□ 0.89
SDC3O75056 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.59■□□□□ 0.89
SDC3O75056 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SDC3O75056 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SDC3O75056 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
SDC3O75056 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.58■□□□□ 0.89
SDC3O75056 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SDC3O75056 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.58■□□□□ 0.89
SDC3O75056 ITM2C-210ENST00000620962 501 ntBASIC20.58■□□□□ 0.89
SDC3O75056 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SDC3O75056 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
SDC3O75056 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.58■□□□□ 0.88
SDC3O75056 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SDC3O75056 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SDC3O75056 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SDC3O75056 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.57■□□□□ 0.88
SDC3O75056 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.57■□□□□ 0.88
SDC3O75056 AC097658.1-201ENST00000475555 843 ntBASIC20.57■□□□□ 0.88
SDC3O75056 AC093827.2-201ENST00000512654 315 ntBASIC20.57■□□□□ 0.88
SDC3O75056 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.57■□□□□ 0.88
SDC3O75056 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.57■□□□□ 0.88
SDC3O75056 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.57■□□□□ 0.88
SDC3O75056 C1orf229-201ENST00000623686 2258 ntBASIC20.57■□□□□ 0.88
SDC3O75056 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SDC3O75056 AC012676.1-201ENST00000574705 1949 ntBASIC20.57■□□□□ 0.88
SDC3O75056 AC026471.6-201ENST00000622954 1905 ntBASIC20.57■□□□□ 0.88
SDC3O75056 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.57■□□□□ 0.88
SDC3O75056 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SDC3O75056 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC3O75056 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.56■□□□□ 0.88
SDC3O75056 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SDC3O75056 AC080038.3-201ENST00000623346 1952 ntBASIC20.56■□□□□ 0.88
SDC3O75056 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC3O75056 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC3O75056 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC3O75056 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC3O75056 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.56■□□□□ 0.88
SDC3O75056 DUSP5P2-201ENST00000426873 1033 ntBASIC20.56■□□□□ 0.88
SDC3O75056 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SDC3O75056 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.56■□□□□ 0.88
SDC3O75056 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.56■□□□□ 0.88
SDC3O75056 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.56■□□□□ 0.88
SDC3O75056 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.56■□□□□ 0.88
SDC3O75056 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SDC3O75056 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SDC3O75056 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SDC3O75056 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.55■□□□□ 0.88
SDC3O75056 AC092053.2-201ENST00000640557 1818 ntBASIC20.55■□□□□ 0.88
SDC3O75056 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SDC3O75056 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SDC3O75056 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SDC3O75056 PRORSD1P-201ENST00000295112 541 ntBASIC20.55■□□□□ 0.88
SDC3O75056 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.55■□□□□ 0.88
SDC3O75056 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.55■□□□□ 0.88
SDC3O75056 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.55■□□□□ 0.88
SDC3O75056 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.55■□□□□ 0.88
SDC3O75056 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.55■□□□□ 0.88
SDC3O75056 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.55■□□□□ 0.88
SDC3O75056 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.55■□□□□ 0.88
SDC3O75056 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SDC3O75056 MYC-209ENST00000641252 345 ntBASIC20.55■□□□□ 0.88
SDC3O75056 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SDC3O75056 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.55■□□□□ 0.88
SDC3O75056 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SDC3O75056 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.55■□□□□ 0.88
SDC3O75056 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
SDC3O75056 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.55■□□□□ 0.88
SDC3O75056 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SDC3O75056 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms