Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.69■■□□□ 1.22
SOX1O00570 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SOX1O00570 AC243732.1-201ENST00000612648 864 ntBASIC22.69■■□□□ 1.22
SOX1O00570 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SOX1O00570 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SOX1O00570 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
SOX1O00570 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX1O00570 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX1O00570 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX1O00570 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX1O00570 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX1O00570 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC22.68■■□□□ 1.22
SOX1O00570 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX1O00570 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.68■■□□□ 1.22
SOX1O00570 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC22.68■■□□□ 1.22
SOX1O00570 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SOX1O00570 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
SOX1O00570 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SOX1O00570 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SOX1O00570 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.67■■□□□ 1.22
SOX1O00570 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SOX1O00570 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.67■■□□□ 1.22
SOX1O00570 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SOX1O00570 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
SOX1O00570 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SOX1O00570 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.66■■□□□ 1.22
SOX1O00570 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SOX1O00570 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.66■■□□□ 1.22
SOX1O00570 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC22.66■■□□□ 1.22
SOX1O00570 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
SOX1O00570 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SOX1O00570 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SOX1O00570 AC239809.2-201ENST00000415381 517 ntBASIC22.66■■□□□ 1.22
SOX1O00570 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC22.66■■□□□ 1.22
SOX1O00570 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SOX1O00570 RBM42-202ENST00000586618 771 ntTSL 3 BASIC22.66■■□□□ 1.22
SOX1O00570 AC026471.5-201ENST00000615068 467 ntBASIC22.66■■□□□ 1.22
SOX1O00570 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
SOX1O00570 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC22.66■■□□□ 1.22
SOX1O00570 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SOX1O00570 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.66■■□□□ 1.22
SOX1O00570 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.66■■□□□ 1.22
SOX1O00570 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC22.66■■□□□ 1.22
SOX1O00570 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SOX1O00570 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
SOX1O00570 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX1O00570 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
SOX1O00570 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX1O00570 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC22.65■■□□□ 1.22
SOX1O00570 AP003071.4-201ENST00000562276 1284 ntBASIC22.65■■□□□ 1.22
SOX1O00570 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC22.65■■□□□ 1.22
SOX1O00570 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX1O00570 AC087388.1-201ENST00000571370 1112 ntBASIC22.65■■□□□ 1.22
SOX1O00570 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC22.65■■□□□ 1.22
SOX1O00570 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX1O00570 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC22.65■■□□□ 1.22
SOX1O00570 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SOX1O00570 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SOX1O00570 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.64■■□□□ 1.22
SOX1O00570 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC22.64■■□□□ 1.22
SOX1O00570 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SOX1O00570 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SOX1O00570 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC22.64■■□□□ 1.21
SOX1O00570 THEM4-205ENST00000489410 643 ntTSL 2 BASIC22.64■■□□□ 1.21
SOX1O00570 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC22.64■■□□□ 1.21
SOX1O00570 AC110285.5-201ENST00000611501 352 ntBASIC22.64■■□□□ 1.21
SOX1O00570 AL589743.5-201ENST00000616611 1050 ntBASIC22.64■■□□□ 1.21
SOX1O00570 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
SOX1O00570 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.64■■□□□ 1.21
SOX1O00570 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.63■■□□□ 1.21
SOX1O00570 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
SOX1O00570 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SOX1O00570 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SOX1O00570 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SOX1O00570 TOLLIP-AS1-201ENST00000530897 939 ntBASIC22.63■■□□□ 1.21
SOX1O00570 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.63■■□□□ 1.21
SOX1O00570 AC006557.6-201ENST00000623071 864 ntBASIC22.63■■□□□ 1.21
SOX1O00570 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC22.63■■□□□ 1.21
SOX1O00570 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX1O00570 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.63■■□□□ 1.21
SOX1O00570 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SOX1O00570 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SOX1O00570 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SOX1O00570 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
SOX1O00570 NMU-205ENST00000511469 756 ntTSL 3 BASIC22.62■■□□□ 1.21
SOX1O00570 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
SOX1O00570 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC22.62■■□□□ 1.21
SOX1O00570 RARRES2P10-201ENST00000564312 460 ntBASIC22.62■■□□□ 1.21
SOX1O00570 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC22.62■■□□□ 1.21
SOX1O00570 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC22.62■■□□□ 1.21
SOX1O00570 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
SOX1O00570 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.62■■□□□ 1.21
SOX1O00570 KRT16P2-201ENST00000414673 1423 ntBASIC22.62■■□□□ 1.21
SOX1O00570 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
SOX1O00570 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
SOX1O00570 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
SOX1O00570 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC22.61■■□□□ 1.21
SOX1O00570 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX1O00570 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.61■■□□□ 1.21
SOX1O00570 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms