Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGN4O00479 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.58■□□□□ 0.72
HMGN4O00479 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
HMGN4O00479 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGN4O00479 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HMGN4O00479 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGN4O00479 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGN4O00479 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGN4O00479 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HMGN4O00479 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.57■□□□□ 0.72
HMGN4O00479 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGN4O00479 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGN4O00479 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGN4O00479 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGN4O00479 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGN4O00479 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.56■□□□□ 0.72
HMGN4O00479 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.56■□□□□ 0.72
HMGN4O00479 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
HMGN4O00479 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.56■□□□□ 0.72
HMGN4O00479 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGN4O00479 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
HMGN4O00479 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.56■□□□□ 0.72
HMGN4O00479 AL157384.1-201ENST00000445995 2473 ntBASIC19.56■□□□□ 0.72
HMGN4O00479 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HMGN4O00479 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HMGN4O00479 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGN4O00479 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.55■□□□□ 0.72
HMGN4O00479 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.55■□□□□ 0.72
HMGN4O00479 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.55■□□□□ 0.72
HMGN4O00479 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HMGN4O00479 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
HMGN4O00479 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
HMGN4O00479 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HMGN4O00479 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGN4O00479 TPRG1LP1-201ENST00000598702 760 ntBASIC19.54■□□□□ 0.72
HMGN4O00479 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGN4O00479 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGN4O00479 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.54■□□□□ 0.72
HMGN4O00479 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGN4O00479 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGN4O00479 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HMGN4O00479 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.54■□□□□ 0.72
HMGN4O00479 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
HMGN4O00479 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGN4O00479 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.53■□□□□ 0.72
HMGN4O00479 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HMGN4O00479 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.53■□□□□ 0.72
HMGN4O00479 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.53■□□□□ 0.72
HMGN4O00479 AL354811.1-201ENST00000610286 706 ntBASIC19.53■□□□□ 0.72
HMGN4O00479 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HMGN4O00479 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
HMGN4O00479 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HMGN4O00479 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGN4O00479 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGN4O00479 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.52■□□□□ 0.72
HMGN4O00479 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.52■□□□□ 0.72
HMGN4O00479 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HMGN4O00479 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.52■□□□□ 0.72
HMGN4O00479 AC142381.2-201ENST00000566120 298 ntBASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms