Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
PCDHGA1Q9Y5H4 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
PCDHGA1Q9Y5H4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
PCDHGA1Q9Y5H4 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.33■□□□□ 0.84
PCDHGA1Q9Y5H4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDHGA1Q9Y5H4 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDHGA1Q9Y5H4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PCDHGA1Q9Y5H4 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PCDHGA1Q9Y5H4 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 AC008550.1-201ENST00000511500 884 ntBASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PCDHGA1Q9Y5H4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PCDHGA1Q9Y5H4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.29■□□□□ 0.84
PCDHGA1Q9Y5H4 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 AC100791.3-201ENST00000617619 330 ntBASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PCDHGA1Q9Y5H4 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 MIR718-201ENST00000390190 70 ntBASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.27■□□□□ 0.84
PCDHGA1Q9Y5H4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
PCDHGA1Q9Y5H4 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.27■□□□□ 0.83
PCDHGA1Q9Y5H4 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDHGA1Q9Y5H4 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PCDHGA1Q9Y5H4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms