Protein–RNA interactions for Protein: Q9HBD1

RC3H2, Roquin-2, humanhuman

Known RBP Predictions only

Length 1,191 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H2Q9HBD1 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 AP003097.1-201ENST00000530657 1135 ntBASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 AC073648.6-201ENST00000641589 218 ntBASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC22.66■■□□□ 1.22
RC3H2Q9HBD1 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 SERPINH1P1-201ENST00000419794 1249 ntBASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 AL158047.1-201ENST00000445918 881 ntBASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 KRT17P1-201ENST00000399211 1546 ntBASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 AC003102.1-202ENST00000563394 1796 ntBASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
RC3H2Q9HBD1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H2Q9HBD1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H2Q9HBD1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H2Q9HBD1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H2Q9HBD1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H2Q9HBD1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
RC3H2Q9HBD1 AC091799.1-201ENST00000422823 811 ntBASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 FAM21FP-204ENST00000608637 956 ntBASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
RC3H2Q9HBD1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 BAALC-201ENST00000297574 801 ntTSL 3 BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RC3H2Q9HBD1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 AC008403.3-201ENST00000598924 454 ntBASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RC3H2Q9HBD1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 LSM12P1-201ENST00000411836 588 ntBASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 RPS2P4-201ENST00000476944 856 ntBASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 AC100791.3-201ENST00000617619 330 ntBASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
RC3H2Q9HBD1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms