Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
EBF3Q9H4W6 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.94■■□□□ 1.1
EBF3Q9H4W6 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.94■■□□□ 1.1
EBF3Q9H4W6 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
EBF3Q9H4W6 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 TSPY20P-201ENST00000450910 630 ntBASIC21.93■■□□□ 1.1
EBF3Q9H4W6 TERF1P5-201ENST00000477545 1207 ntBASIC21.93■■□□□ 1.1
EBF3Q9H4W6 KRT18P6-201ENST00000555540 1265 ntBASIC21.93■■□□□ 1.1
EBF3Q9H4W6 AC133552.2-202ENST00000575694 574 ntBASIC21.93■■□□□ 1.1
EBF3Q9H4W6 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.93■■□□□ 1.1
EBF3Q9H4W6 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 AC013268.1-206ENST00000638368 961 ntBASIC21.92■■□□□ 1.1
EBF3Q9H4W6 AC112229.1-201ENST00000639295 961 ntBASIC21.92■■□□□ 1.1
EBF3Q9H4W6 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
EBF3Q9H4W6 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 SLC7A5P1-201ENST00000568957 537 ntBASIC21.91■■□□□ 1.1
EBF3Q9H4W6 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 TMEM191A-211ENST00000637163 1067 ntBASIC21.91■■□□□ 1.1
EBF3Q9H4W6 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
EBF3Q9H4W6 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.9■■□□□ 1.1
EBF3Q9H4W6 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
EBF3Q9H4W6 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
EBF3Q9H4W6 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.89■■□□□ 1.1
EBF3Q9H4W6 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
EBF3Q9H4W6 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
EBF3Q9H4W6 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
EBF3Q9H4W6 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.09
EBF3Q9H4W6 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
EBF3Q9H4W6 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
EBF3Q9H4W6 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
EBF3Q9H4W6 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms