Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS13AQ96RL7 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.1■□□□□ 0.97
VPS13AQ96RL7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS13AQ96RL7 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.1■□□□□ 0.97
VPS13AQ96RL7 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS13AQ96RL7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VPS13AQ96RL7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VPS13AQ96RL7 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.09■□□□□ 0.97
VPS13AQ96RL7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 AP004607.7-201ENST00000527152 1677 ntBASIC21.09■□□□□ 0.97
VPS13AQ96RL7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 HLA-B-256ENST00000639848 1089 ntBASIC21.09■□□□□ 0.97
VPS13AQ96RL7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VPS13AQ96RL7 AP003733.4-201ENST00000623785 1697 ntBASIC21.09■□□□□ 0.97
VPS13AQ96RL7 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.08■□□□□ 0.97
VPS13AQ96RL7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VPS13AQ96RL7 AC087499.1-201ENST00000418141 1075 ntBASIC21.08■□□□□ 0.97
VPS13AQ96RL7 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VPS13AQ96RL7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.08■□□□□ 0.96
VPS13AQ96RL7 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
VPS13AQ96RL7 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
VPS13AQ96RL7 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VPS13AQ96RL7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
VPS13AQ96RL7 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 AL355472.2-201ENST00000422958 438 ntBASIC21.07■□□□□ 0.96
VPS13AQ96RL7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 AL591742.1-201ENST00000604433 565 ntBASIC21.07■□□□□ 0.96
VPS13AQ96RL7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS13AQ96RL7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 PNMA6B-201ENST00000538162 1200 ntBASIC21.06■□□□□ 0.96
VPS13AQ96RL7 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 SOX15-203ENST00000570788 1093 ntBASIC21.06■□□□□ 0.96
VPS13AQ96RL7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.06■□□□□ 0.96
VPS13AQ96RL7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 AC060766.5-201ENST00000590539 871 ntBASIC21.05■□□□□ 0.96
VPS13AQ96RL7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 MIR4785-201ENST00000585005 73 ntBASIC21.05■□□□□ 0.96
VPS13AQ96RL7 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS13AQ96RL7 KRT17P2-201ENST00000300992 1314 ntBASIC21.04■□□□□ 0.96
VPS13AQ96RL7 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS13AQ96RL7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms