Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 AP001160.3-201ENST00000601484 763 ntBASIC19.89■□□□□ 0.77
PTCHD1Q96NR3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 AC138907.5-202ENST00000569484 235 ntBASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 AL137784.2-201ENST00000607332 1000 ntBASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
PTCHD1Q96NR3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
PTCHD1Q96NR3 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 AC092437.1-201ENST00000624794 1048 ntBASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.86■□□□□ 0.77
PTCHD1Q96NR3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 AC010141.2-201ENST00000452426 721 ntBASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 FBXW4P1-201ENST00000426721 2239 ntBASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
PTCHD1Q96NR3 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 AC004911.1-201ENST00000416316 871 ntBASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
PTCHD1Q96NR3 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 AC006015.1-201ENST00000429970 570 ntBASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 KRT18P11-201ENST00000435214 1283 ntBASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 AC008175.2-201ENST00000612840 297 ntBASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.83■□□□□ 0.77
PTCHD1Q96NR3 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms