Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 tK(CUU)D1tK(CUU)D1 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)D2tK(CUU)D2 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)E1tK(CUU)E1 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)E2tK(CUU)E2 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)FtK(CUU)F 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)G1tK(CUU)G1 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)G2tK(CUU)G2 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)G3tK(CUU)G3 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)ItK(CUU)I 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)JtK(CUU)J 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)KtK(CUU)K 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)MtK(CUU)M 73 nt4.69□□□□□ -1.66
UBP3Q01477 tK(CUU)PtK(CUU)P 73 nt4.69□□□□□ -1.66
UBP3Q01477 TAM41YGR046W 1158 nt4.69□□□□□ -1.66
UBP3Q01477 YMR087WYMR087W 855 nt4.69□□□□□ -1.66
UBP3Q01477 YBR090CYBR090C 369 nt4.69□□□□□ -1.66
UBP3Q01477 snR41snR41 95 nt4.69□□□□□ -1.66
UBP3Q01477 AZR1YGR224W 1842 nt4.69□□□□□ -1.66
UBP3Q01477 GDH2YDL215C 3279 nt4.68□□□□□ -1.66
UBP3Q01477 PBP4YDL053C 558 nt4.68□□□□□ -1.66
UBP3Q01477 RPL9AYGL147C 576 nt4.68□□□□□ -1.66
UBP3Q01477 GPP1YIL053W 753 nt4.68□□□□□ -1.66
UBP3Q01477 BER1YLR412W 825 nt4.68□□□□□ -1.66
UBP3Q01477 RPL18BYNL301C 561 nt4.68□□□□□ -1.66 RIP-Chip
UBP3Q01477 RPL18AYOL120C 561 nt4.68□□□□□ -1.66
UBP3Q01477 YPL135C-AYPL135C-A 174 nt4.68□□□□□ -1.66
UBP3Q01477 NUP133YKR082W 3474 nt4.68□□□□□ -1.66 RIP-Chip
UBP3Q01477 SRP1YNL189W 1629 nt4.68□□□□□ -1.66
UBP3Q01477 RRN11YML043C 1524 nt4.67□□□□□ -1.66
UBP3Q01477 STE24YJR117W 1362 nt4.67□□□□□ -1.66
UBP3Q01477 AFR1YDR085C 1863 nt4.67□□□□□ -1.66 RIP-Chip
UBP3Q01477 SKG6YHR149C 2205 nt4.67□□□□□ -1.66 RIP-Chip
UBP3Q01477 PER1YCR044C 1074 nt4.67□□□□□ -1.66
UBP3Q01477 RPS18AYDR450W 441 nt4.67□□□□□ -1.66
UBP3Q01477 YGR039WYGR039W 312 nt4.67□□□□□ -1.66
UBP3Q01477 RPS20YHL015W 366 nt4.67□□□□□ -1.66
UBP3Q01477 IES3YLR052W 753 nt4.67□□□□□ -1.66 RIP-Chip
UBP3Q01477 RPS1AYLR441C 768 nt4.67□□□□□ -1.66
UBP3Q01477 DYN3YMR299C 939 nt4.67□□□□□ -1.66
UBP3Q01477 HUB1YNR032C-A 222 nt4.67□□□□□ -1.66
UBP3Q01477 YOL159CYOL159C 516 nt4.67□□□□□ -1.66 RIP-Chip
UBP3Q01477 IDH2YOR136W 1110 nt4.67□□□□□ -1.66
UBP3Q01477 RPA43YOR340C 981 nt4.67□□□□□ -1.66
UBP3Q01477 PHO84YML123C 1764 nt4.67□□□□□ -1.66
UBP3Q01477 KRE2YDR483W 1329 nt4.67□□□□□ -1.66 RIP-Chip
UBP3Q01477 PES4YFR023W 1836 nt4.67□□□□□ -1.66
UBP3Q01477 NUP2YLR335W 2163 nt4.67□□□□□ -1.66
UBP3Q01477 IMH1YLR309C 2736 nt4.66□□□□□ -1.66
UBP3Q01477 RNT1YMR239C 1416 nt4.66□□□□□ -1.66
UBP3Q01477 BNA7YDR428C 786 nt4.66□□□□□ -1.66
UBP3Q01477 HLR1YDR528W 1272 nt4.66□□□□□ -1.66
UBP3Q01477 VFA1YER128W 612 nt4.66□□□□□ -1.66
UBP3Q01477 GET1YGL020C 708 nt4.66□□□□□ -1.66 RIP-Chip
UBP3Q01477 TWF1YGR080W 999 nt4.66□□□□□ -1.66
UBP3Q01477 AGE2YIL044C 897 nt4.66□□□□□ -1.66
UBP3Q01477 BET3YKR068C 582 nt4.66□□□□□ -1.66
UBP3Q01477 BET5YML077W 480 nt4.66□□□□□ -1.66
UBP3Q01477 YMR158W-BYMR158W-B 321 nt4.66□□□□□ -1.66
UBP3Q01477 YBL055CYBL055C 1257 nt4.66□□□□□ -1.66 RIP-Chip
UBP3Q01477 LYP1YNL268W 1836 nt4.66□□□□□ -1.66 RIP-Chip
UBP3Q01477 BUD27YFL023W 2391 nt4.66□□□□□ -1.66
UBP3Q01477 CDC15YAR019C 2925 nt4.66□□□□□ -1.66
UBP3Q01477 MET4YNL103W 2019 nt4.66□□□□□ -1.66 RIP-Chip
UBP3Q01477 SNU56YDR240C 1479 nt4.66□□□□□ -1.66 RIP-Chip
UBP3Q01477 DPH6YLR143W 2058 nt4.65□□□□□ -1.66
UBP3Q01477 YCR013CYCR013C 648 nt4.65□□□□□ -1.67
UBP3Q01477 YDR381C-AYDR381C-A 345 nt4.65□□□□□ -1.67
UBP3Q01477 YER175W-AYER175W-A 165 nt4.65□□□□□ -1.67
UBP3Q01477 YHR097CYHR097C 1101 nt4.65□□□□□ -1.67
UBP3Q01477 YHR182C-AYHR182C-A 474 nt4.65□□□□□ -1.67
UBP3Q01477 VPS51YKR020W 495 nt4.65□□□□□ -1.67
UBP3Q01477 RPL40BYKR094C 387 nt4.65□□□□□ -1.67
UBP3Q01477 YAL068W-AYAL068W-A 255 nt4.65□□□□□ -1.67
UBP3Q01477 YNR034W-AYNR034W-A 297 nt4.65□□□□□ -1.67
UBP3Q01477 CAT5YOR125C 702 nt4.65□□□□□ -1.67
UBP3Q01477 YBR062CYBR062C 543 nt4.65□□□□□ -1.67
UBP3Q01477 DIB1YPR082C 432 nt4.65□□□□□ -1.67
UBP3Q01477 MRPS9YBR146W 837 nt4.65□□□□□ -1.67
UBP3Q01477 APD1YBR151W 951 nt4.65□□□□□ -1.67 RIP-Chip
UBP3Q01477 NEL1YHR035W 1893 nt4.64□□□□□ -1.67
UBP3Q01477 UBP16YPL072W 1500 nt4.64□□□□□ -1.67
UBP3Q01477 AIM7YDR063W 450 nt4.64□□□□□ -1.67
UBP3Q01477 YDR366CYDR366C 399 nt4.64□□□□□ -1.67 RIP-Chip
UBP3Q01477 RGI2YIL057C 495 nt4.64□□□□□ -1.67
UBP3Q01477 NNF1YJR112W 606 nt4.64□□□□□ -1.67
UBP3Q01477 YKL065W-AYKL065W-A 222 nt4.64□□□□□ -1.67
UBP3Q01477 YMR173W-AYMR173W-A 1185 nt4.64□□□□□ -1.67
UBP3Q01477 FLO8YER109C 2400 nt4.64□□□□□ -1.67
UBP3Q01477 PIG2YIL045W 1617 nt4.64□□□□□ -1.67
UBP3Q01477 OSH2YDL019C 3852 nt4.64□□□□□ -1.67 RIP-Chip
UBP3Q01477 snR7-SsnR7-S 179 nt4.63□□□□□ -1.67
UBP3Q01477 PRM8YGL053W 714 nt4.63□□□□□ -1.67
UBP3Q01477 PET54YGR222W 882 nt4.63□□□□□ -1.67
UBP3Q01477 EMC2YJR088C 879 nt4.63□□□□□ -1.67
UBP3Q01477 YLR287CYLR287C 1068 nt4.63□□□□□ -1.67
UBP3Q01477 YLR364C-AYLR364C-A 123 nt4.63□□□□□ -1.67
UBP3Q01477 ATP18YML081C-A 180 nt4.63□□□□□ -1.67 RIP-Chip
UBP3Q01477 RPL19AYBR084C-A 570 nt4.63□□□□□ -1.67 RIP-Chip
UBP3Q01477 PHO88YBR106W 567 nt4.63□□□□□ -1.67 RIP-Chip
UBP3Q01477 MIP6YHR015W 1980 nt4.63□□□□□ -1.67
Retrieved 100 of 7,029 protein–RNA pairs in 27.7 ms