Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
PDLIM4P50479 AC013268.1-206ENST00000638368 961 ntBASIC17.87■□□□□ 0.45
PDLIM4P50479 AC112229.1-201ENST00000639295 961 ntBASIC17.87■□□□□ 0.45
PDLIM4P50479 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 NFE2L3P1-201ENST00000588207 1959 ntBASIC17.87■□□□□ 0.45
PDLIM4P50479 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.87■□□□□ 0.45
PDLIM4P50479 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.87■□□□□ 0.45
PDLIM4P50479 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.87■□□□□ 0.45
PDLIM4P50479 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.87■□□□□ 0.45
PDLIM4P50479 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM4P50479 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.86■□□□□ 0.45
PDLIM4P50479 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
PDLIM4P50479 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
PDLIM4P50479 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
PDLIM4P50479 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC17.86■□□□□ 0.45
PDLIM4P50479 CNN2P6-201ENST00000439038 900 ntBASIC17.86■□□□□ 0.45
PDLIM4P50479 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.86■□□□□ 0.45
PDLIM4P50479 SLC7A5P2-201ENST00000553010 536 ntBASIC17.86■□□□□ 0.45
PDLIM4P50479 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.86■□□□□ 0.45
PDLIM4P50479 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC17.86■□□□□ 0.45
PDLIM4P50479 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.86■□□□□ 0.45
PDLIM4P50479 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 AC233723.2-201ENST00000623798 2106 ntBASIC17.86■□□□□ 0.45
PDLIM4P50479 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.86■□□□□ 0.45
PDLIM4P50479 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
PDLIM4P50479 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM4P50479 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM4P50479 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM4P50479 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM4P50479 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM4P50479 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM4P50479 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM4P50479 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.85■□□□□ 0.45
PDLIM4P50479 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.85■□□□□ 0.45
PDLIM4P50479 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PDLIM4P50479 TERF1P5-201ENST00000477545 1207 ntBASIC17.85■□□□□ 0.45
PDLIM4P50479 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
PDLIM4P50479 CD99P1-205ENST00000527459 561 ntBASIC17.85■□□□□ 0.45
PDLIM4P50479 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
PDLIM4P50479 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
PDLIM4P50479 AC105036.2-201ENST00000569468 176 ntBASIC17.85■□□□□ 0.45
PDLIM4P50479 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.85■□□□□ 0.45
PDLIM4P50479 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.85■□□□□ 0.45
PDLIM4P50479 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.85■□□□□ 0.45
PDLIM4P50479 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM4P50479 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM4P50479 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM4P50479 GAMT-205ENST00000640762 751 ntTSL 5 BASIC17.85■□□□□ 0.45
PDLIM4P50479 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
PDLIM4P50479 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.84■□□□□ 0.45
PDLIM4P50479 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.84■□□□□ 0.45
PDLIM4P50479 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.84■□□□□ 0.45
PDLIM4P50479 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.84■□□□□ 0.45
PDLIM4P50479 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.84■□□□□ 0.45
PDLIM4P50479 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.84■□□□□ 0.45
PDLIM4P50479 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
PDLIM4P50479 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.84■□□□□ 0.45
PDLIM4P50479 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PDLIM4P50479 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM4P50479 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM4P50479 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM4P50479 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
PDLIM4P50479 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.83■□□□□ 0.45
PDLIM4P50479 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
PDLIM4P50479 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.83■□□□□ 0.44
PDLIM4P50479 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC17.83■□□□□ 0.44
PDLIM4P50479 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.83■□□□□ 0.44
PDLIM4P50479 AC133552.2-202ENST00000575694 574 ntBASIC17.83■□□□□ 0.44
PDLIM4P50479 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
PDLIM4P50479 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms