Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC28.2■■■□□ 2.11
COL18A1P39060 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
COL18A1P39060 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL18A1P39060 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC28.19■■■□□ 2.1
COL18A1P39060 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL18A1P39060 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
COL18A1P39060 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC28.19■■■□□ 2.1
COL18A1P39060 CYP2T3P-201ENST00000601990 817 ntBASIC28.19■■■□□ 2.1
COL18A1P39060 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL18A1P39060 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC28.19■■■□□ 2.1
COL18A1P39060 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
COL18A1P39060 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC28.19■■■□□ 2.1
COL18A1P39060 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC28.19■■■□□ 2.1
COL18A1P39060 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
COL18A1P39060 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC28.19■■■□□ 2.1
COL18A1P39060 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
COL18A1P39060 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC28.19■■■□□ 2.1
COL18A1P39060 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL18A1P39060 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL18A1P39060 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
COL18A1P39060 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL18A1P39060 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
COL18A1P39060 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC28.18■■■□□ 2.1
COL18A1P39060 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC28.18■■■□□ 2.1
COL18A1P39060 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
COL18A1P39060 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
COL18A1P39060 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC28.17■■■□□ 2.1
COL18A1P39060 RPS2P4-201ENST00000476944 856 ntBASIC28.17■■■□□ 2.1
COL18A1P39060 AC008550.1-201ENST00000511500 884 ntBASIC28.17■■■□□ 2.1
COL18A1P39060 FAM21FP-204ENST00000608637 956 ntBASIC28.17■■■□□ 2.1
COL18A1P39060 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC28.17■■■□□ 2.1
COL18A1P39060 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL18A1P39060 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
COL18A1P39060 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
COL18A1P39060 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC28.16■■■□□ 2.1
COL18A1P39060 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL18A1P39060 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC28.16■■■□□ 2.1
COL18A1P39060 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL18A1P39060 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL18A1P39060 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
COL18A1P39060 BAALC-201ENST00000297574 801 ntTSL 3 BASIC28.16■■■□□ 2.1
COL18A1P39060 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL18A1P39060 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL18A1P39060 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
COL18A1P39060 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
COL18A1P39060 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC28.16■■■□□ 2.1
COL18A1P39060 AC003102.1-202ENST00000563394 1796 ntBASIC28.16■■■□□ 2.1
COL18A1P39060 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL18A1P39060 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL18A1P39060 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL18A1P39060 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
COL18A1P39060 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
COL18A1P39060 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL18A1P39060 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC28.15■■■□□ 2.1
COL18A1P39060 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL18A1P39060 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC28.15■■■□□ 2.1
COL18A1P39060 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC28.15■■■□□ 2.1
COL18A1P39060 KLF2-202ENST00000592003 564 ntTSL 3 BASIC28.15■■■□□ 2.1
COL18A1P39060 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC28.15■■■□□ 2.1
COL18A1P39060 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC28.15■■■□□ 2.1
COL18A1P39060 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC28.15■■■□□ 2.1
COL18A1P39060 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC28.15■■■□□ 2.1
COL18A1P39060 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
COL18A1P39060 NME6-213ENST00000451657 871 ntTSL 2 BASIC28.14■■■□□ 2.1
COL18A1P39060 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
COL18A1P39060 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC28.14■■■□□ 2.1
COL18A1P39060 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC28.14■■■□□ 2.1
COL18A1P39060 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
COL18A1P39060 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
COL18A1P39060 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
COL18A1P39060 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC28.13■■■□□ 2.09
COL18A1P39060 MME-217ENST00000616757 1315 ntTSL 5 BASIC28.13■■■□□ 2.09
COL18A1P39060 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
COL18A1P39060 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC28.13■■■□□ 2.09
COL18A1P39060 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC28.13■■■□□ 2.09
COL18A1P39060 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC28.13■■■□□ 2.09
COL18A1P39060 RNF121-214ENST00000533380 870 ntTSL 3 BASIC28.13■■■□□ 2.09
COL18A1P39060 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC28.13■■■□□ 2.09
COL18A1P39060 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
COL18A1P39060 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC28.12■■■□□ 2.09
COL18A1P39060 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC28.12■■■□□ 2.09
COL18A1P39060 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL18A1P39060 AC100791.3-201ENST00000617619 330 ntBASIC28.12■■■□□ 2.09
COL18A1P39060 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
COL18A1P39060 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC28.12■■■□□ 2.09
COL18A1P39060 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC28.12■■■□□ 2.09
COL18A1P39060 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
COL18A1P39060 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC28.11■■■□□ 2.09
COL18A1P39060 PEX7-202ENST00000367756 680 ntTSL 3 BASIC28.11■■■□□ 2.09
COL18A1P39060 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
COL18A1P39060 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC28.11■■■□□ 2.09
COL18A1P39060 PNMA6B-201ENST00000538162 1200 ntBASIC28.11■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms