Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
COL5A3P25940 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26.94■■□□□ 1.9
COL5A3P25940 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC26.94■■□□□ 1.9
COL5A3P25940 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC26.94■■□□□ 1.9
COL5A3P25940 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC26.94■■□□□ 1.9
COL5A3P25940 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC26.93■■□□□ 1.9
COL5A3P25940 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.93■■□□□ 1.9
COL5A3P25940 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC26.93■■□□□ 1.9
COL5A3P25940 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC26.93■■□□□ 1.9
COL5A3P25940 CYP2T3P-201ENST00000601990 817 ntBASIC26.93■■□□□ 1.9
COL5A3P25940 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
COL5A3P25940 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
COL5A3P25940 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
COL5A3P25940 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
COL5A3P25940 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
COL5A3P25940 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC26.93■■□□□ 1.9
COL5A3P25940 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
COL5A3P25940 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
COL5A3P25940 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC26.93■■□□□ 1.9
COL5A3P25940 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
COL5A3P25940 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC26.92■■□□□ 1.9
COL5A3P25940 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC26.92■■□□□ 1.9
COL5A3P25940 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL5A3P25940 FAM21FP-204ENST00000608637 956 ntBASIC26.92■■□□□ 1.9
COL5A3P25940 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL5A3P25940 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL5A3P25940 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
COL5A3P25940 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL5A3P25940 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC26.91■■□□□ 1.9
COL5A3P25940 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC26.91■■□□□ 1.9
COL5A3P25940 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.91■■□□□ 1.9
COL5A3P25940 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
COL5A3P25940 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
COL5A3P25940 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
COL5A3P25940 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
COL5A3P25940 KLF2-202ENST00000592003 564 ntTSL 3 BASIC26.9■■□□□ 1.9
COL5A3P25940 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL5A3P25940 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL5A3P25940 BAALC-201ENST00000297574 801 ntTSL 3 BASIC26.89■■□□□ 1.9
COL5A3P25940 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL5A3P25940 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC26.89■■□□□ 1.9
COL5A3P25940 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL5A3P25940 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
COL5A3P25940 AC008550.1-201ENST00000511500 884 ntBASIC26.89■■□□□ 1.9
COL5A3P25940 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
COL5A3P25940 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC26.89■■□□□ 1.89
COL5A3P25940 AC003102.1-202ENST00000563394 1796 ntBASIC26.89■■□□□ 1.89
COL5A3P25940 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL5A3P25940 RPS2P4-201ENST00000476944 856 ntBASIC26.88■■□□□ 1.89
COL5A3P25940 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL5A3P25940 RNF121-214ENST00000533380 870 ntTSL 3 BASIC26.88■■□□□ 1.89
COL5A3P25940 PNMA6B-201ENST00000538162 1200 ntBASIC26.88■■□□□ 1.89
COL5A3P25940 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL5A3P25940 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL5A3P25940 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
COL5A3P25940 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
COL5A3P25940 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL5A3P25940 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC26.87■■□□□ 1.89
COL5A3P25940 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC26.87■■□□□ 1.89
COL5A3P25940 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC26.87■■□□□ 1.89
COL5A3P25940 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC26.87■■□□□ 1.89
COL5A3P25940 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC26.87■■□□□ 1.89
COL5A3P25940 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL5A3P25940 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL5A3P25940 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL5A3P25940 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL5A3P25940 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
COL5A3P25940 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
COL5A3P25940 NME6-213ENST00000451657 871 ntTSL 2 BASIC26.87■■□□□ 1.89
COL5A3P25940 AC069544.1-201ENST00000609399 999 ntBASIC26.87■■□□□ 1.89
COL5A3P25940 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC26.87■■□□□ 1.89
COL5A3P25940 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
COL5A3P25940 MME-217ENST00000616757 1315 ntTSL 5 BASIC26.86■■□□□ 1.89
COL5A3P25940 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL5A3P25940 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC26.86■■□□□ 1.89
COL5A3P25940 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC26.86■■□□□ 1.89
COL5A3P25940 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC26.86■■□□□ 1.89
COL5A3P25940 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
COL5A3P25940 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.86■■□□□ 1.89
COL5A3P25940 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
COL5A3P25940 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC26.85■■□□□ 1.89
COL5A3P25940 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 LSM12P1-201ENST00000411836 588 ntBASIC26.85■■□□□ 1.89
COL5A3P25940 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
COL5A3P25940 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.89
COL5A3P25940 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
COL5A3P25940 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms