Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH3P22223 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH3P22223 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH3P22223 AP006587.3-201ENST00000525742 1516 ntBASIC20.57■□□□□ 0.88
CDH3P22223 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH3P22223 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDH3P22223 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.57■□□□□ 0.88
CDH3P22223 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CDH3P22223 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CDH3P22223 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.56■□□□□ 0.88
CDH3P22223 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH3P22223 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.56■□□□□ 0.88
CDH3P22223 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.56■□□□□ 0.88
CDH3P22223 AC104187.1-201ENST00000607510 612 ntBASIC20.56■□□□□ 0.88
CDH3P22223 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CDH3P22223 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CDH3P22223 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDH3P22223 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CDH3P22223 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CDH3P22223 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH3P22223 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.55■□□□□ 0.88
CDH3P22223 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDH3P22223 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH3P22223 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH3P22223 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 AC080038.3-201ENST00000623346 1952 ntBASIC20.54■□□□□ 0.88
CDH3P22223 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CDH3P22223 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH3P22223 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CDH3P22223 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.54■□□□□ 0.88
CDH3P22223 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CDH3P22223 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDH3P22223 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.54■□□□□ 0.88
CDH3P22223 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.53■□□□□ 0.88
CDH3P22223 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CDH3P22223 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CDH3P22223 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH3P22223 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH3P22223 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH3P22223 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH3P22223 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDH3P22223 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.52■□□□□ 0.88
CDH3P22223 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CDH3P22223 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH3P22223 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.52■□□□□ 0.88
CDH3P22223 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH3P22223 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.52■□□□□ 0.88
CDH3P22223 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.52■□□□□ 0.88
CDH3P22223 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDH3P22223 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDH3P22223 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
CDH3P22223 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
CDH3P22223 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDH3P22223 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH3P22223 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH3P22223 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
CDH3P22223 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms