Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC4P09017 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC4P09017 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXC4P09017 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXC4P09017 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC4P09017 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 AL512625.2-201ENST00000417533 625 ntBASIC20.69■□□□□ 0.9
HOXC4P09017 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.69■□□□□ 0.9
HOXC4P09017 GUSBP6-202ENST00000438529 1198 ntBASIC20.69■□□□□ 0.9
HOXC4P09017 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.69■□□□□ 0.9
HOXC4P09017 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXC4P09017 AL591742.1-201ENST00000604433 565 ntBASIC20.69■□□□□ 0.9
HOXC4P09017 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.69■□□□□ 0.9
HOXC4P09017 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXC4P09017 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXC4P09017 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXC4P09017 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXC4P09017 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HOXC4P09017 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
HOXC4P09017 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HOXC4P09017 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXC4P09017 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HOXC4P09017 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HOXC4P09017 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HOXC4P09017 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXC4P09017 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXC4P09017 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXC4P09017 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.67■□□□□ 0.9
HOXC4P09017 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 CYP2T1P-201ENST00000432607 1285 ntBASIC20.67■□□□□ 0.9
HOXC4P09017 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC4P09017 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXC4P09017 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXC4P09017 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HOXC4P09017 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
HOXC4P09017 AC105036.2-201ENST00000569468 176 ntBASIC20.66■□□□□ 0.9
HOXC4P09017 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.66■□□□□ 0.9
HOXC4P09017 AC069236.1-201ENST00000604339 616 ntBASIC20.66■□□□□ 0.9
HOXC4P09017 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.66■□□□□ 0.9
HOXC4P09017 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC4P09017 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXC4P09017 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC4P09017 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXC4P09017 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC4P09017 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC4P09017 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC4P09017 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HOXC4P09017 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 SLC29A4P1-201ENST00000398760 971 ntBASIC20.65■□□□□ 0.9
HOXC4P09017 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXC4P09017 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HOXC4P09017 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HOXC4P09017 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.65■□□□□ 0.9
HOXC4P09017 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
HOXC4P09017 AC008694.1-202ENST00000636953 945 ntBASIC20.65■□□□□ 0.9
HOXC4P09017 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXC4P09017 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC4P09017 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
HOXC4P09017 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.64■□□□□ 0.9
HOXC4P09017 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC4P09017 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HOXC4P09017 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.64■□□□□ 0.89
HOXC4P09017 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HOXC4P09017 AC245052.3-201ENST00000450182 901 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms