Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.66■□□□□ 0.9
TNFP01375 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TNFP01375 FAM99A-202ENST00000538190 1989 ntBASIC20.65■□□□□ 0.9
TNFP01375 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TNFP01375 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TNFP01375 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.65■□□□□ 0.9
TNFP01375 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
TNFP01375 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.65■□□□□ 0.9
TNFP01375 AC142086.2-201ENST00000569753 217 ntBASIC20.65■□□□□ 0.9
TNFP01375 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.65■□□□□ 0.9
TNFP01375 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.65■□□□□ 0.9
TNFP01375 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFP01375 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TNFP01375 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
TNFP01375 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.64■□□□□ 0.9
TNFP01375 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.64■□□□□ 0.9
TNFP01375 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TNFP01375 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TNFP01375 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFP01375 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.64■□□□□ 0.89
TNFP01375 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.64■□□□□ 0.89
TNFP01375 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.64■□□□□ 0.89
TNFP01375 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFP01375 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFP01375 CYP2T1P-201ENST00000432607 1285 ntBASIC20.64■□□□□ 0.89
TNFP01375 GUSBP6-202ENST00000438529 1198 ntBASIC20.64■□□□□ 0.89
TNFP01375 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.64■□□□□ 0.89
TNFP01375 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.64■□□□□ 0.89
TNFP01375 AC069236.1-201ENST00000604339 616 ntBASIC20.64■□□□□ 0.89
TNFP01375 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TNFP01375 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
TNFP01375 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.63■□□□□ 0.89
TNFP01375 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TNFP01375 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFP01375 RBM17P2-201ENST00000616397 1405 ntBASIC20.63■□□□□ 0.89
TNFP01375 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 AC010542.4-201ENST00000563151 1910 ntBASIC20.63■□□□□ 0.89
TNFP01375 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFP01375 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFP01375 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.63■□□□□ 0.89
TNFP01375 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFP01375 OR10C1-204ENST00000622521 1039 ntBASIC20.63■□□□□ 0.89
TNFP01375 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.63■□□□□ 0.89
TNFP01375 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
TNFP01375 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TNFP01375 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
TNFP01375 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TNFP01375 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TNFP01375 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.62■□□□□ 0.89
TNFP01375 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TNFP01375 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TNFP01375 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TNFP01375 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.62■□□□□ 0.89
TNFP01375 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.62■□□□□ 0.89
TNFP01375 AC243732.1-201ENST00000612648 864 ntBASIC20.62■□□□□ 0.89
TNFP01375 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.62■□□□□ 0.89
TNFP01375 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.62■□□□□ 0.89
TNFP01375 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TNFP01375 AC242852.2-201ENST00000615738 1807 ntBASIC20.62■□□□□ 0.89
TNFP01375 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.62■□□□□ 0.89
TNFP01375 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.62■□□□□ 0.89
TNFP01375 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
TNFP01375 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFP01375 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.61■□□□□ 0.89
TNFP01375 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFP01375 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFP01375 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TNFP01375 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TNFP01375 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.61■□□□□ 0.89
TNFP01375 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 AL591742.1-201ENST00000604433 565 ntBASIC20.61■□□□□ 0.89
TNFP01375 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TNFP01375 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.61■□□□□ 0.89
TNFP01375 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.61■□□□□ 0.89
TNFP01375 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TNFP01375 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.6■□□□□ 0.89
TNFP01375 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
TNFP01375 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.6■□□□□ 0.89
TNFP01375 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TNFP01375 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.6■□□□□ 0.89
TNFP01375 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms