Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH4O15457 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH4O15457 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
MSH4O15457 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
MSH4O15457 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
MSH4O15457 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH4O15457 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
MSH4O15457 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
MSH4O15457 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC23.78■■□□□ 1.4
MSH4O15457 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
MSH4O15457 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
MSH4O15457 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.78■■□□□ 1.4
MSH4O15457 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH4O15457 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC23.78■■□□□ 1.4
MSH4O15457 RARRES2P11-201ENST00000635158 484 ntBASIC23.78■■□□□ 1.4
MSH4O15457 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
MSH4O15457 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH4O15457 MFF-203ENST00000349901 1716 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH4O15457 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.78■■□□□ 1.4
MSH4O15457 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC23.77■■□□□ 1.4
MSH4O15457 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC23.77■■□□□ 1.4
MSH4O15457 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.77■■□□□ 1.4
MSH4O15457 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.77■■□□□ 1.4
MSH4O15457 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.77■■□□□ 1.4
MSH4O15457 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
MSH4O15457 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
MSH4O15457 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
MSH4O15457 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.76■■□□□ 1.39
MSH4O15457 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 BRI3-207ENST00000539286 699 ntTSL 2 BASIC23.76■■□□□ 1.39
MSH4O15457 SLC7A5P1-201ENST00000568957 537 ntBASIC23.76■■□□□ 1.39
MSH4O15457 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.76■■□□□ 1.39
MSH4O15457 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.76■■□□□ 1.39
MSH4O15457 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
MSH4O15457 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.76■■□□□ 1.39
MSH4O15457 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.75■■□□□ 1.39
MSH4O15457 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
MSH4O15457 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.75■■□□□ 1.39
MSH4O15457 AC079834.2-201ENST00000609776 1949 ntBASIC23.75■■□□□ 1.39
MSH4O15457 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 CDCA4P2-201ENST00000441182 718 ntBASIC23.75■■□□□ 1.39
MSH4O15457 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC23.75■■□□□ 1.39
MSH4O15457 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
MSH4O15457 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 AC073111.5-205ENST00000641717 521 ntBASIC23.75■■□□□ 1.39
MSH4O15457 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
MSH4O15457 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23.75■■□□□ 1.39
MSH4O15457 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23.75■■□□□ 1.39
MSH4O15457 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
MSH4O15457 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.74■■□□□ 1.39
MSH4O15457 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
MSH4O15457 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH4O15457 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
MSH4O15457 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.74■■□□□ 1.39
MSH4O15457 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH4O15457 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH4O15457 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH4O15457 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.74■■□□□ 1.39
MSH4O15457 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC23.74■■□□□ 1.39
MSH4O15457 RAP2CP1-201ENST00000605103 478 ntBASIC23.74■■□□□ 1.39
MSH4O15457 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
MSH4O15457 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms