Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SMIM28A0A1B0GU29 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
SMIM28A0A1B0GU29 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
SMIM28A0A1B0GU29 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 GPX1P1-201ENST00000388829 606 ntBASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 AL109923.1-201ENST00000618799 583 ntBASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SMIM28A0A1B0GU29 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 LSR-203ENST00000360798 1963 ntTSL 2 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 AC083906.2-201ENST00000511578 360 ntBASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 AC133561.1-201ENST00000568600 2415 ntBASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SMIM28A0A1B0GU29 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
SMIM28A0A1B0GU29 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 AL121832.2-201ENST00000610979 668 ntBASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 AC068338.2-201ENST00000563278 1430 ntBASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMIM28A0A1B0GU29 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 ME2-206ENST00000638410 2289 ntTSL 5 BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 ME2-210ENST00000639255 2262 ntTSL 5 BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 RBM17P2-201ENST00000616397 1405 ntBASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 AC007322.4-201ENST00000509611 723 ntBASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMIM28A0A1B0GU29 C11orf96-202ENST00000528572 1834 ntBASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 NARF-205ENST00000412079 1760 ntTSL 5 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 METTL15-202ENST00000403099 795 ntTSL 5 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 PLLP-204ENST00000569059 665 ntTSL 3 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 FGF8-207ENST00000618991 856 ntTSL 3 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
SMIM28A0A1B0GU29 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 OAS3-207ENST00000551007 998 ntTSL 2 BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 AC012676.1-201ENST00000574705 1949 ntBASIC22.67■■□□□ 1.22
SMIM28A0A1B0GU29 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
SMIM28A0A1B0GU29 AC133552.2-202ENST00000575694 574 ntBASIC22.66■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms