Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 MFF-203ENST00000349901 1716 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 AC009237.3-201ENST00000393279 1427 ntBASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 TSPY26P-201ENST00000476365 1326 ntBASIC15.17■□□□□ 0.02
TRAV4A0A0B4J268 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 RASA4CP-201ENST00000424092 1398 ntBASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 NALT1-201ENST00000429224 738 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 AC110285.6-201ENST00000617652 491 ntBASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 AC073130.3-201ENST00000624389 2278 ntBASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TRAV4A0A0B4J268 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 AC091305.1-201ENST00000479476 895 ntBASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 AC105233.4-201ENST00000642045 216 ntBASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 AC003102.1-202ENST00000563394 1796 ntBASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC15.15■□□□□ 0.02
TRAV4A0A0B4J268 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 ASL-203ENST00000380839 1765 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 MIR939-201ENST00000401314 82 ntBASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 MFF-208ENST00000409616 1247 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 AF213884.3-201ENST00000563833 479 ntBASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TRAV4A0A0B4J268 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TRAV4A0A0B4J268 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms