Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 MIR939-201ENST00000401314 82 ntBASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 AICDA-202ENST00000537228 667 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 AL031432.3-201ENST00000607698 485 ntBASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 SLC25A24-204ENST00000569674 2357 ntBASIC17.64■□□□□ 0.41
TRAV39A0A0B4J263 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 PALM-207ENST00000590161 2137 ntTSL 4 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 AL136967.2-201ENST00000623968 743 ntBASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRAV39A0A0B4J263 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 RASA4CP-201ENST00000424092 1398 ntBASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
TRAV39A0A0B4J263 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV39A0A0B4J263 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms