Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
VPS35Q96QK1 PKD1P6-201ENST00000343738 4769 ntBASIC21■□□□□ 0.95
VPS35Q96QK1 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
VPS35Q96QK1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS35Q96QK1 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
VPS35Q96QK1 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS35Q96QK1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS35Q96QK1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS35Q96QK1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS35Q96QK1 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS35Q96QK1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS35Q96QK1 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS35Q96QK1 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS35Q96QK1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS35Q96QK1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS35Q96QK1 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS35Q96QK1 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS35Q96QK1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS35Q96QK1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS35Q96QK1 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS35Q96QK1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS35Q96QK1 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS35Q96QK1 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS35Q96QK1 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS35Q96QK1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.97■□□□□ 0.95
VPS35Q96QK1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 AC010141.2-201ENST00000452426 721 ntBASIC20.97■□□□□ 0.95
VPS35Q96QK1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS35Q96QK1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS35Q96QK1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS35Q96QK1 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS35Q96QK1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS35Q96QK1 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
VPS35Q96QK1 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS35Q96QK1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
VPS35Q96QK1 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
VPS35Q96QK1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS35Q96QK1 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
VPS35Q96QK1 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS35Q96QK1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS35Q96QK1 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS35Q96QK1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS35Q96QK1 AP001160.3-201ENST00000601484 763 ntBASIC20.95■□□□□ 0.94
VPS35Q96QK1 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS35Q96QK1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS35Q96QK1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS35Q96QK1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS35Q96QK1 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS35Q96QK1 AC022517.1-201ENST00000592429 346 ntBASIC20.94■□□□□ 0.94
VPS35Q96QK1 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
VPS35Q96QK1 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS35Q96QK1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS35Q96QK1 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS35Q96QK1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.93■□□□□ 0.94
VPS35Q96QK1 KRT18P20-201ENST00000548986 1279 ntBASIC20.93■□□□□ 0.94
VPS35Q96QK1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS35Q96QK1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VPS35Q96QK1 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
VPS35Q96QK1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS35Q96QK1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms