Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
LINC01560Q8TB33 AC093323.1-202ENST00000635031 2045 ntBASIC18.36■□□□□ 0.53
LINC01560Q8TB33 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 AC008687.6-201ENST00000596318 630 ntBASIC18.35■□□□□ 0.53
LINC01560Q8TB33 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LINC01560Q8TB33 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 KRT16P2-201ENST00000414673 1423 ntBASIC18.34■□□□□ 0.53
LINC01560Q8TB33 RBM17P2-201ENST00000616397 1405 ntBASIC18.34■□□□□ 0.53
LINC01560Q8TB33 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 KRT18P29-201ENST00000397031 1267 ntBASIC18.34■□□□□ 0.53
LINC01560Q8TB33 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 AL591742.1-201ENST00000604433 565 ntBASIC18.34■□□□□ 0.53
LINC01560Q8TB33 AC092118.2-201ENST00000613495 667 ntBASIC18.34■□□□□ 0.53
LINC01560Q8TB33 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LINC01560Q8TB33 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LINC01560Q8TB33 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.33■□□□□ 0.53
LINC01560Q8TB33 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LINC01560Q8TB33 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LINC01560Q8TB33 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LINC01560Q8TB33 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LINC01560Q8TB33 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.33■□□□□ 0.52
LINC01560Q8TB33 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.33■□□□□ 0.52
LINC01560Q8TB33 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LINC01560Q8TB33 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LINC01560Q8TB33 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LINC01560Q8TB33 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LINC01560Q8TB33 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 AC097658.1-201ENST00000475555 843 ntBASIC18.32■□□□□ 0.52
LINC01560Q8TB33 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LINC01560Q8TB33 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 ITM2C-210ENST00000620962 501 ntBASIC18.31■□□□□ 0.52
LINC01560Q8TB33 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 AC003102.1-202ENST00000563394 1796 ntBASIC18.31■□□□□ 0.52
LINC01560Q8TB33 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 AC010980.2-201ENST00000587099 1412 ntBASIC18.31■□□□□ 0.52
LINC01560Q8TB33 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.31■□□□□ 0.52
LINC01560Q8TB33 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LINC01560Q8TB33 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LINC01560Q8TB33 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LINC01560Q8TB33 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.3■□□□□ 0.52
LINC01560Q8TB33 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LINC01560Q8TB33 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LINC01560Q8TB33 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.3■□□□□ 0.52
LINC01560Q8TB33 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms