Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SKA3Q8IX90 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC18.67■□□□□ 0.58
SKA3Q8IX90 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SKA3Q8IX90 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SKA3Q8IX90 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
SKA3Q8IX90 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.66■□□□□ 0.58
SKA3Q8IX90 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.66■□□□□ 0.58
SKA3Q8IX90 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.66■□□□□ 0.58
SKA3Q8IX90 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA3Q8IX90 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.66■□□□□ 0.58
SKA3Q8IX90 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.65■□□□□ 0.58
SKA3Q8IX90 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SKA3Q8IX90 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA3Q8IX90 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.64■□□□□ 0.57
SKA3Q8IX90 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.64■□□□□ 0.57
SKA3Q8IX90 AC104564.3-201ENST00000582367 638 ntBASIC18.64■□□□□ 0.57
SKA3Q8IX90 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.64■□□□□ 0.57
SKA3Q8IX90 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.64■□□□□ 0.57
SKA3Q8IX90 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SKA3Q8IX90 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SKA3Q8IX90 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.64■□□□□ 0.57
SKA3Q8IX90 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SKA3Q8IX90 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
SKA3Q8IX90 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SKA3Q8IX90 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.62■□□□□ 0.57
SKA3Q8IX90 AC007375.3-201ENST00000600936 2314 ntBASIC18.62■□□□□ 0.57
SKA3Q8IX90 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
SKA3Q8IX90 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
SKA3Q8IX90 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 CCDC92B-201ENST00000575506 885 ntBASIC18.62■□□□□ 0.57
SKA3Q8IX90 TERF1P2-201ENST00000583350 1212 ntBASIC18.62■□□□□ 0.57
SKA3Q8IX90 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.62■□□□□ 0.57
SKA3Q8IX90 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.62■□□□□ 0.57
SKA3Q8IX90 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SKA3Q8IX90 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms