Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 MIR4497-201ENST00000583208 89 ntBASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CSPG4Q6UVK1 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 AIRN-201ENST00000601203 4374 ntBASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CSPG4Q6UVK1 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 AL445228.2-201ENST00000605589 952 ntBASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CSPG4Q6UVK1 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 AC010980.2-201ENST00000587099 1412 ntBASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CSPG4Q6UVK1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 Z99916.2-201ENST00000604037 246 ntBASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CSPG4Q6UVK1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 RBM17P2-201ENST00000616397 1405 ntBASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CSPG4Q6UVK1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms