Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIM2P55344 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIM2P55344 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.08■□□□□ 0.81
LIM2P55344 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIM2P55344 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
LIM2P55344 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.08■□□□□ 0.81
LIM2P55344 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.08■□□□□ 0.81
LIM2P55344 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.08■□□□□ 0.8
LIM2P55344 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIM2P55344 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIM2P55344 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIM2P55344 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIM2P55344 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.07■□□□□ 0.8
LIM2P55344 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.07■□□□□ 0.8
LIM2P55344 DUX4L2-201ENST00000561772 1275 ntBASIC20.07■□□□□ 0.8
LIM2P55344 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.07■□□□□ 0.8
LIM2P55344 DUX4L6-201ENST00000626483 1275 ntBASIC20.07■□□□□ 0.8
LIM2P55344 DUX4L1-201ENST00000627662 1275 ntBASIC20.07■□□□□ 0.8
LIM2P55344 DUX4L8-201ENST00000629013 1275 ntBASIC20.07■□□□□ 0.8
LIM2P55344 DUX4L3-201ENST00000630187 1275 ntBASIC20.07■□□□□ 0.8
LIM2P55344 DUX4L7-201ENST00000630678 1275 ntBASIC20.07■□□□□ 0.8
LIM2P55344 DUX4L5-201ENST00000630834 1275 ntBASIC20.07■□□□□ 0.8
LIM2P55344 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.07■□□□□ 0.8
LIM2P55344 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.07■□□□□ 0.8
LIM2P55344 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
LIM2P55344 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIM2P55344 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.06■□□□□ 0.8
LIM2P55344 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.06■□□□□ 0.8
LIM2P55344 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.06■□□□□ 0.8
LIM2P55344 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
LIM2P55344 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIM2P55344 KRT87P-202ENST00000534226 1464 ntBASIC20.05■□□□□ 0.8
LIM2P55344 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
LIM2P55344 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
LIM2P55344 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIM2P55344 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.05■□□□□ 0.8
LIM2P55344 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.05■□□□□ 0.8
LIM2P55344 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LIM2P55344 MIR935-201ENST00000401179 91 ntBASIC20.05■□□□□ 0.8
LIM2P55344 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.05■□□□□ 0.8
LIM2P55344 AC034268.1-201ENST00000441047 882 ntBASIC20.05■□□□□ 0.8
LIM2P55344 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.05■□□□□ 0.8
LIM2P55344 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIM2P55344 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.05■□□□□ 0.8
LIM2P55344 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIM2P55344 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
LIM2P55344 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.05■□□□□ 0.8
LIM2P55344 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIM2P55344 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIM2P55344 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
LIM2P55344 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.04■□□□□ 0.8
LIM2P55344 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LIM2P55344 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.04■□□□□ 0.8
LIM2P55344 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIM2P55344 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.03■□□□□ 0.8
LIM2P55344 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.03■□□□□ 0.8
LIM2P55344 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LIM2P55344 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.03■□□□□ 0.8
LIM2P55344 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.03■□□□□ 0.8
LIM2P55344 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.03■□□□□ 0.8
LIM2P55344 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LIM2P55344 AC244015.2-201ENST00000616358 1861 ntBASIC20.03■□□□□ 0.8
LIM2P55344 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms