Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDX1P47902 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CDX1P47902 ESRRAP2-201ENST00000418437 1549 ntBASIC17.11■□□□□ 0.33
CDX1P47902 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX1P47902 AL157384.1-201ENST00000445995 2473 ntBASIC17.11■□□□□ 0.33
CDX1P47902 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX1P47902 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX1P47902 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDX1P47902 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDX1P47902 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDX1P47902 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CDX1P47902 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.11■□□□□ 0.33
CDX1P47902 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 TSPY26P-201ENST00000476365 1326 ntBASIC17.11■□□□□ 0.33
CDX1P47902 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDX1P47902 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.11■□□□□ 0.33
CDX1P47902 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.11■□□□□ 0.33
CDX1P47902 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDX1P47902 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CDX1P47902 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.11■□□□□ 0.33
CDX1P47902 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CDX1P47902 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CDX1P47902 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX1P47902 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 AC092053.2-201ENST00000640557 1818 ntBASIC17.1■□□□□ 0.33
CDX1P47902 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX1P47902 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CDX1P47902 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX1P47902 AC010525.1-201ENST00000585559 441 ntBASIC17.1■□□□□ 0.33
CDX1P47902 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC17.1■□□□□ 0.33
CDX1P47902 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 AC068587.7-201ENST00000641602 218 ntBASIC17.1■□□□□ 0.33
CDX1P47902 AC005229.4-201ENST00000610085 2198 ntBASIC17.1■□□□□ 0.33
CDX1P47902 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX1P47902 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CDX1P47902 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDX1P47902 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.1■□□□□ 0.33
CDX1P47902 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX1P47902 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 RARRES2P6-201ENST00000567333 442 ntBASIC17.09■□□□□ 0.33
CDX1P47902 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CDX1P47902 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDX1P47902 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX1P47902 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDX1P47902 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.09■□□□□ 0.33
CDX1P47902 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDX1P47902 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDX1P47902 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX1P47902 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDX1P47902 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CDX1P47902 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
CDX1P47902 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDX1P47902 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.08■□□□□ 0.33
CDX1P47902 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC17.08■□□□□ 0.32
CDX1P47902 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC17.08■□□□□ 0.32
CDX1P47902 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CDX1P47902 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.08■□□□□ 0.32
CDX1P47902 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CDX1P47902 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CDX1P47902 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX1P47902 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.08■□□□□ 0.32
CDX1P47902 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.07■□□□□ 0.32
CDX1P47902 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.07■□□□□ 0.32
CDX1P47902 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
CDX1P47902 AC004687.1-201ENST00000579003 1625 ntBASIC17.07■□□□□ 0.32
CDX1P47902 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDX1P47902 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms