Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.14■□□□□ 0.81
MSX2P35548 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.14■□□□□ 0.81
MSX2P35548 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.14■□□□□ 0.81
MSX2P35548 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.14■□□□□ 0.81
MSX2P35548 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.14■□□□□ 0.81
MSX2P35548 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.14■□□□□ 0.81
MSX2P35548 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.14■□□□□ 0.81
MSX2P35548 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSX2P35548 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSX2P35548 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSX2P35548 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.13■□□□□ 0.81
MSX2P35548 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.13■□□□□ 0.81
MSX2P35548 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.13■□□□□ 0.81
MSX2P35548 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.13■□□□□ 0.81
MSX2P35548 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.13■□□□□ 0.81
MSX2P35548 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.13■□□□□ 0.81
MSX2P35548 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.13■□□□□ 0.81
MSX2P35548 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 AP005212.1-201ENST00000581547 1997 ntBASIC20.13■□□□□ 0.81
MSX2P35548 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
MSX2P35548 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.13■□□□□ 0.81
MSX2P35548 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
MSX2P35548 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.12■□□□□ 0.81
MSX2P35548 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
MSX2P35548 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.12■□□□□ 0.81
MSX2P35548 AL031848.2-201ENST00000607670 837 ntBASIC20.12■□□□□ 0.81
MSX2P35548 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
MSX2P35548 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.12■□□□□ 0.81
MSX2P35548 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
MSX2P35548 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.11■□□□□ 0.81
MSX2P35548 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
MSX2P35548 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.11■□□□□ 0.81
MSX2P35548 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSX2P35548 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.11■□□□□ 0.81
MSX2P35548 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
MSX2P35548 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.11■□□□□ 0.81
MSX2P35548 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
MSX2P35548 GABARAPL3-202ENST00000624044 1851 ntBASIC20.11■□□□□ 0.81
MSX2P35548 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
MSX2P35548 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
MSX2P35548 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
MSX2P35548 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.11■□□□□ 0.81
MSX2P35548 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX2P35548 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
MSX2P35548 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.1■□□□□ 0.81
MSX2P35548 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX2P35548 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
MSX2P35548 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
MSX2P35548 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX2P35548 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.1■□□□□ 0.81
MSX2P35548 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX2P35548 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX2P35548 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.1■□□□□ 0.81
MSX2P35548 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX2P35548 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.1■□□□□ 0.81
MSX2P35548 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
MSX2P35548 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
MSX2P35548 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
MSX2P35548 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.09■□□□□ 0.81
MSX2P35548 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.09■□□□□ 0.81
MSX2P35548 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
MSX2P35548 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms