Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX4O14627 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDX4O14627 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CDX4O14627 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX4O14627 KRT17P1-201ENST00000399211 1546 ntBASIC20.63■□□□□ 0.89
CDX4O14627 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX4O14627 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.63■□□□□ 0.89
CDX4O14627 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.63■□□□□ 0.89
CDX4O14627 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.63■□□□□ 0.89
CDX4O14627 C1QBPP2-201ENST00000528754 825 ntBASIC20.63■□□□□ 0.89
CDX4O14627 AC060766.5-201ENST00000590539 871 ntBASIC20.63■□□□□ 0.89
CDX4O14627 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.63■□□□□ 0.89
CDX4O14627 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX4O14627 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDX4O14627 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDX4O14627 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CDX4O14627 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX4O14627 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
CDX4O14627 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.62■□□□□ 0.89
CDX4O14627 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.62■□□□□ 0.89
CDX4O14627 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDX4O14627 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
CDX4O14627 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.61■□□□□ 0.89
CDX4O14627 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDX4O14627 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
CDX4O14627 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.61■□□□□ 0.89
CDX4O14627 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.61■□□□□ 0.89
CDX4O14627 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CDX4O14627 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.61■□□□□ 0.89
CDX4O14627 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 AL355472.2-201ENST00000422958 438 ntBASIC20.61■□□□□ 0.89
CDX4O14627 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.61■□□□□ 0.89
CDX4O14627 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.61■□□□□ 0.89
CDX4O14627 CYP2T3P-201ENST00000601990 817 ntBASIC20.61■□□□□ 0.89
CDX4O14627 AC010331.1-201ENST00000611423 582 ntBASIC20.61■□□□□ 0.89
CDX4O14627 HLA-B-256ENST00000639848 1089 ntBASIC20.61■□□□□ 0.89
CDX4O14627 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.61■□□□□ 0.89
CDX4O14627 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDX4O14627 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDX4O14627 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CDX4O14627 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.6■□□□□ 0.89
CDX4O14627 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC20.6■□□□□ 0.89
CDX4O14627 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.6■□□□□ 0.89
CDX4O14627 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.6■□□□□ 0.89
CDX4O14627 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.6■□□□□ 0.89
CDX4O14627 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 SNORA78-201ENST00000459373 127 ntBASIC20.6■□□□□ 0.89
CDX4O14627 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.6■□□□□ 0.89
CDX4O14627 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.6■□□□□ 0.89
CDX4O14627 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX4O14627 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CDX4O14627 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.59■□□□□ 0.89
CDX4O14627 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDX4O14627 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CDX4O14627 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX4O14627 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.59■□□□□ 0.89
CDX4O14627 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX4O14627 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX4O14627 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX4O14627 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CDX4O14627 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CDX4O14627 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.59■□□□□ 0.89
CDX4O14627 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.59■□□□□ 0.89
CDX4O14627 RN7SL471P-201ENST00000580476 299 ntBASIC20.59■□□□□ 0.89
CDX4O14627 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.59■□□□□ 0.89
CDX4O14627 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDX4O14627 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.59■□□□□ 0.89
CDX4O14627 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.59■□□□□ 0.89
CDX4O14627 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX4O14627 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDX4O14627 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX4O14627 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.58■□□□□ 0.89
CDX4O14627 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CDX4O14627 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.58■□□□□ 0.89
CDX4O14627 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.58■□□□□ 0.89
CDX4O14627 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.58■□□□□ 0.89
CDX4O14627 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.58■□□□□ 0.89
CDX4O14627 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.88
CDX4O14627 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDX4O14627 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CDX4O14627 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDX4O14627 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
CDX4O14627 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX4O14627 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX4O14627 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX4O14627 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CDX4O14627 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms