Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 YBX1P1-201ENST00000445822 960 ntBASIC20.08■□□□□ 0.81
ATG4BQ9Y4P1 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.08■□□□□ 0.81
ATG4BQ9Y4P1 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.08■□□□□ 0.81
ATG4BQ9Y4P1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ATG4BQ9Y4P1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ATG4BQ9Y4P1 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ATG4BQ9Y4P1 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ATG4BQ9Y4P1 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
ATG4BQ9Y4P1 LINC02228-203ENST00000641970 1355 ntBASIC20.08■□□□□ 0.8
ATG4BQ9Y4P1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 AC123595.1-201ENST00000440769 1046 ntBASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ATG4BQ9Y4P1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 AC097381.1-201ENST00000429019 1296 ntBASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 MIR6821-201ENST00000617625 74 ntBASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 Z98882.1-201ENST00000622160 2253 ntBASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ATG4BQ9Y4P1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 CLDN5-201ENST00000403084 2357 ntBASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 AC026310.3-201ENST00000625186 2373 ntBASIC20.05■□□□□ 0.8
ATG4BQ9Y4P1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.04■□□□□ 0.8
ATG4BQ9Y4P1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 TERF1P2-201ENST00000583350 1212 ntBASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ATG4BQ9Y4P1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms